RNA id: TU46161


Basic Information

Item Value
RNA id TU46161
length 291
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G36936
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43232356 ~ 43232646 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagaattttttctgtacccttccccagatctgtgcctcgatacaatcctgtctcggcggtctacagacaattccttggacttcatggcttggtttgtgctctgacatgcactgttaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccaatcaactgaatttaccacaggtggactccaatcaagttgtagaaacatctcatggatgatcagtggaaacaggatgcacctgagctcaattttgagtgtcatggcaaaggctgtgaatacttatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46129 lncRNA upstream 281934 42950206 ~ 42950422 (+) True G36910
TU46114 lncRNA upstream 363722 42868402 ~ 42868634 (+) True G36895
TU46031 lncRNA upstream 606538 42625225 ~ 42625818 (+) False AMCG00019751
TU46022 lncRNA upstream 629334 42602809 ~ 42603022 (+) True G36845
TU46021 lncRNA upstream 647204 42584858 ~ 42585152 (+) True G36844
TU46232 lncRNA downstream 226800 43459446 ~ 43550548 (+) True G37000
TU46233 lncRNA downstream 268406 43501052 ~ 43550548 (+) False G37000
TU46252 lncRNA downstream 343602 43576248 ~ 43577257 (+) True G37011
TU46314 lncRNA downstream 681546 43914192 ~ 43914819 (+) False G37068
TU46315 lncRNA downstream 681546 43914192 ~ 43914819 (+) False G37068
AMCG00019755 mRNA upstream 269857 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019753 mRNA upstream 492017 42717933 ~ 42740339 (+) True AMCG00019753
AMCG00019750 mRNA upstream 569863 42654647 ~ 42662493 (+) True AMCG00019750
AMCG00019751 mRNA upstream 605251 42624730 ~ 42627105 (+) True AMCG00019751
AMCG00019747 mRNA upstream 660276 42557299 ~ 42572080 (+) False AMCG00019747
AMCG00019758 mRNA downstream 29298 43261944 ~ 43271192 (+) True AMCG00019758
AMCG00019762 mRNA downstream 66432 43299078 ~ 43302976 (+) True AMCG00019762
AMCG00019759 mRNA downstream 130355 43363001 ~ 43368277 (+) True AMCG00019759
AMCG00019764 mRNA downstream 294801 43527447 ~ 43552305 (+) True AMCG00019764
AMCG00019766 mRNA downstream 332440 43565086 ~ 43566039 (+) True AMCG00019766
TU46131 other upstream 269698 42960656 ~ 42962658 (+) True AMCG00019755
TU46002 other upstream 673420 42556540 ~ 42558936 (+) True AMCG00019747
TU45249 other upstream 5716329 37513987 ~ 37516027 (+) True G36212
TU45071 other upstream 6932809 36292346 ~ 36299547 (+) True AMCG00019671
TU44996 other upstream 7168511 36046490 ~ 36063845 (+) False AMCG00019662
TU46165 other downstream 29248 43261894 ~ 43270885 (+) False AMCG00019758
TU46181 other downstream 97646 43330292 ~ 43333313 (+) True G36954
TU46357 other downstream 820428 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 2046809 45279455 ~ 45339619 (+) False G37372
TU46904 other downstream 3558381 46791027 ~ 46791485 (+) True G37561

Expression Profile