RNA id: AMCG00019764


Basic Information

Item Value
RNA id AMCG00019764
length 2314
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00019764
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43527447 ~ 43552305 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGGTTCCACATTACTCTGCCAAGcagcagcaccgccaacagcagcaacagcggCAGTgccagcggcagcagcagcaacaacaacgcCCGCAAACAGATCTGCCGCCCTCTCCACAGCACACTCACAAAGACATCGCCCAAACAACCACTGGTCAAGGACATGGACATCAAAACCGATTCACAGTTGTTGCCTGGCAACCAAAAGTACCGACGTGCCACCACGGGCTCTGCGCACTCCGTCACCTCTGGCAGGAGAAGCATGGACCTGGCCAAATCTGGCATCAAAATCCTAGTTCCCAAGAGCCCTGTGAAAAGCAGGACTGAGGCGGACGATTTTCCCAGTGAAGGGGCGCAGAGCCTAGAGCAAACGGAGCAGGATCATGACTCTGTTCCACCGGAGGTGGCCCTGGAGAAGCCCATGGGCTCTCTGCTGGGTCCGGGAGCCGAGAGGGCCCGAATGGGGACCCGACCGCGGACTCAAACCATTTTGCCACAAGCACAGGGGCCAGTGACCGCCGCCACAGCCTCGGCACTAACACTCAACGGCAAAGGTACCTCTGCGTTCATGGAAGCCCTGGCAGCCAATGGTACAGCCAGTATGCAGAGCTCGGTCACTGGGGTAACGGCAGGGAAGCGGCGGTTCGAGGAAAGGCAAGCTTTCGACAAGAGACTTCGATTCAGCGTCCGACAAACCGAAAGTGCCTACCGCTACAGAGACATTGTCGTCAAGAAGCAAGACGGTTTCACTCACATATTACTCTCCACAAAGTCTTCAGAAAACAACTCCTTAAACCCAGATGTCATGAAGGAGGTCCAGAGTGCACTCACCACCGCTGCTGCTGATGACAGTAAGCTTGTTCTGCTCAGTGCCGTGGGCAGCGTTTTCTGCTTTGGcctggattttatttattttattcgcCGGCTAACTGACGACAGGAAAAGAGAGAGCACTAAAATGGCCGAATCGATCAGGACCTTCGTGAACACTTTCATTCAGTTCAAGAAACCGATCATCGTGGCGGTGAACGGGCCGGCGGTGGGACTGGGAGCCTCCATCCTGCCCCTGTGTGACGTGATCTGGGCCAATGAGAAGGCCTGGTTCCAGACACCTTACACCACGTTTGGGCAAACACCAGATGCCTGTTCatccctcacgttccccaggaTCATGGGGGTGGCTTCTGCCAATGAGATGCTCTTCAGCGGCAGGAAGCTCACGGCGCAGGAGGCATGTGCGAAGGGCCTGGTCTCTCAAGTGTTCTGGCCCGGGACCTTTACTCAGGAGGTGATGGTGCGCATTAGGGAGCTAGTCTCTTGTAATTCAGTTGTCCTCCGGGAGTCCAAAGCTCTGGTCCGCAGCACCACTAAGGCAGCACTAGAGCAGGCCAATGAGAAGGAGTGCGAGGTCCTCAAGCGGGTGTGGGGGTCCCCCCAGGGCATGGACTCCATTCTCAAGTACCTGCAGAAGAAGATCGACGAGTTCTAGGAACTGCTCCACGCCCCCTGAgttaattttttatgtttttgtactCAACAgaactgctgtgctgtgtgtgttgcaaacatttcaggtttttcttGGGGGGAGTTTTTTTTGGGCCCAAGAGAAAAGCAATGCCAaccccaaaacatttttttaaacctgggAGCTGCGAAACCAGCACACCCTCCCTGCTCCTCAGCCTAATGTGCTTTATCAGCTACATGGACCTGCTAACATTGGTActgtaatacttttttaatagtttttttgtcCGAGTCCAGGTGGTGGGGGAGGGTCTATCCTGTCTTaacaggagagaaaaagaaagaaaaagttggATTGATGTCTATTTTTGTATAAGGAAGAAACAAGCCTTACGATTTCGCTCGCAGGAAAAAAGGAATTTAAGAAAACGGGTCAACGTTGTGTCCTCCCTAGAAGGCTCAAAGGCCACAGGTTTTAGTCTGTAGGACAGAAAGGTCACAGACCGGACCGTCGGATTGACGCGCCGCTGGGTCATCAGCTCCCTCTGGAGACCCACGATGCATCTGGTATCCACTGAGGGACTCGTCTCGACCAGCTTCTTTTCCACAcgtttttccttttcctttggAAGATACCTTTTCCTTAGAAGCATGAAGAAACCACTGGCTCCTTCAAACGCCTCTTCTGTTCGGCAGTATTAGACACACGAGACGAGTAAACTTAAGTTATACcaagtgttttgctttttaatgtagTATTTTTGGTCTAATTTCATCTAGTTTATTTgcttatacatttacaaatgaaagattattattattttttttttttacagtttcag

Function

GO: NA

KEGG:

id description
K00653 CDY; chromodomain protein Y

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46161 lncRNA upstream 294801 43232356 ~ 43232646 (+) True G36936
TU46129 lncRNA upstream 577025 42950206 ~ 42950422 (+) True G36910
TU46114 lncRNA upstream 658813 42868402 ~ 42868634 (+) True G36895
TU46031 lncRNA upstream 901629 42625225 ~ 42625818 (+) False AMCG00019751
TU46022 lncRNA upstream 924425 42602809 ~ 42603022 (+) True G36845
TU46252 lncRNA downstream 23943 43576248 ~ 43577257 (+) True G37011
TU46314 lncRNA downstream 361887 43914192 ~ 43914819 (+) False G37068
TU46315 lncRNA downstream 361887 43914192 ~ 43914819 (+) False G37068
TU46316 lncRNA downstream 361887 43914192 ~ 43914819 (+) True G37068
TU46318 lncRNA downstream 381798 43934103 ~ 43934319 (+) True G37070
AMCG00019759 mRNA upstream 159170 43363001 ~ 43368277 (+) True AMCG00019759
AMCG00019762 mRNA upstream 224471 43299078 ~ 43302976 (+) True AMCG00019762
AMCG00019758 mRNA upstream 256255 43261944 ~ 43271192 (+) True AMCG00019758
AMCG00019755 mRNA upstream 564948 42960677 ~ 42962499 (+) False AMCG00019755
AMCG00019753 mRNA upstream 787108 42717933 ~ 42740339 (+) True AMCG00019753
AMCG00019766 mRNA downstream 12781 43565086 ~ 43566039 (+) True AMCG00019766
AMCG00019767 mRNA downstream 150238 43702543 ~ 43705085 (+) True AMCG00019767
AMCG00019770 mRNA downstream 396730 43949035 ~ 43964268 (+) True AMCG00019770
AMCG00019773 mRNA downstream 462205 44014510 ~ 44044675 (+) True AMCG00019773
AMCG00019775 mRNA downstream 508220 44060525 ~ 44070657 (+) True AMCG00019775
TU46181 other upstream 194134 43330292 ~ 43333313 (+) True G36954
TU46165 other upstream 256562 43261894 ~ 43270885 (+) False AMCG00019758
TU46131 other upstream 564789 42960656 ~ 42962658 (+) True AMCG00019755
TU46002 other upstream 968511 42556540 ~ 42558936 (+) True AMCG00019747
TU45249 other upstream 6011420 37513987 ~ 37516027 (+) True G36212
TU46357 other downstream 500769 44053074 ~ 44056603 (+) True G37105
TU46693 other downstream 1727150 45279455 ~ 45339619 (+) False G37372
TU46904 other downstream 3238722 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 4898323 48450628 ~ 48451167 (+) True G37779
TU47362 other downstream 6006177 49558482 ~ 49561383 (+) True G37962

Expression Profile