RNA id: AMCG00020580


Basic Information

Item Value
RNA id AMCG00020580
length 1353
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00020580
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25252878 ~ 25262500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTTGCAAAATGGTCAGCCGCCCTCCTCCACTGAGATTCCAGAAGGAGAGCTCATGCTGCAGGCACTGAATGGCTTTGTGCTGGTCATGACTGGGGACGGGACTGTCTTCTACACCTCCCATAACATCCAAGATCACCTTGGCTTCTACCAGAGTGATGTCATCAACCAGAGCATCTTCGATCTCATCCACACGGAGGACAGGGCTGAGTTCACCAGACAGCTGACCCATGATCTGGCACGGGACACAGGAGACAAAGGGCAGGCTAATGGAGCAGCAGCCCTGTGTGAACCAGGCCAGCAGACCACTGACCCCTCGATTTGTTTGGACCGCAGCTTTGTGTGCAGAATGCGCTGCCTGCTTGACTGTGCCTCTGGGTTCCTCACCTTGCAGATTCAGGGTAAGCTGAAGGCCCTGAAGGAGTTTGGGCAGCCAGCAGTGAGCCTGGCAAAGCTCGCTCTGTTTGCCATCGCTGTGCCCATCCACCCGCCTGCCATAATGGAGATCCGCACCCGTAACCTGGCCTTCCGTACCAAGCACAAGCTGGACTTCACACCCACCTGGGTTGACAACAAAGGGAAGACAATCCTGGGCTGGAGTGTGACGGAGCTGGTGGAACAAACAGGATATTTCTACATTCACTTTGAGGATCTGCTCTACTGTGCTGGAGGACACATCAAGTtaaTGAAGAATGGGAACAGCGGATTGACGGTTTTCCGGCTGCTGACCAAGAACTACACCTGGGTTTGGATTAGAGCCATCGCACACTTAGTCTACGAAGAAGGAAAACCCAGCTTCATTCTGGCCACACAGAGACCCATAACGGATGCCGAGGGAGAGGAGCACATGTTGAAGAGAGCCAAACAAGAGCGCTTCTCCTTGGACAGCCTGTCCCTGCTCTATGACAGCACTGACGTCCTGCACCCTAGTGCTCGTGCCTTTCTGCAGCAGGTAGAGAGCCGGCACAAAGCCCAGGGGCCCTGCCAAAGCACCGTCATAGGGGCAAACATCAGCAAGGACGAGCCTCCCTACATCTTCCGGCCTCCCGAGGCACCTTGCCCACAGGCCTGGCCACAATTTCCCACCAACGTCAGCATCTGGGAACTGCTGTGGCACTACGGGCTGTGCCAGGATGATCTGGACATCATCTTGAATGACGAGGCTATCGCCAGACTGGAAGCCCCCAACACTGCTGAAGATCTCCTGAGCTTAGTGCCACCGGCAGTGAGGCAGCCCTCCCTGGCCCAGTCTAGCCTGGCATCTGTGCCTCCAGGGATGCACAAGTCTGCTCCTGAATCCCACATGGAAGCCAGTGTCCTGGGAGAGCACACCCTGCCCAGCAATGGGCTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80341 lncRNA upstream 155981 25096482 ~ 25096897 (+) True G64226
TU80339 lncRNA upstream 159848 25091792 ~ 25093030 (+) True G64224
TU80335 lncRNA upstream 171999 25078142 ~ 25080879 (+) True AMCG00020573
TU80331 lncRNA upstream 188506 25064001 ~ 25064372 (+) True G64220
TU80321 lncRNA upstream 192549 25058169 ~ 25060329 (+) True G64210
TU80398 lncRNA downstream 906 25263406 ~ 25266151 (+) False G64269
TU80399 lncRNA downstream 906 25263406 ~ 25266207 (+) True G64269
TU80432 lncRNA downstream 67581 25330081 ~ 25330558 (+) True G64297
TU80436 lncRNA downstream 69759 25332259 ~ 25333177 (+) False G64300
TU80435 lncRNA downstream 70120 25332620 ~ 25333682 (+) True G64300
AMCG00020578 mRNA upstream 13558 25221825 ~ 25239320 (+) True AMCG00020578
AMCG00020577 mRNA upstream 46307 25188322 ~ 25206571 (+) True AMCG00020577
AMCG00020582 mRNA upstream 91351 25152851 ~ 25161527 (+) True AMCG00020582
AMCG00020573 mRNA upstream 168005 25078864 ~ 25084873 (+) False AMCG00020573
AMCG00020572 mRNA upstream 176190 25062373 ~ 25076688 (+) False AMCG00020572
AMCG00020579 mRNA downstream 7043 25269543 ~ 25275985 (+) True AMCG00020579
AMCG00020584 mRNA downstream 74375 25336875 ~ 25339801 (+) True AMCG00020584
AMCG00020583 mRNA downstream 87229 25349729 ~ 25360490 (+) True AMCG00020583
AMCG00020587 mRNA downstream 104349 25366849 ~ 25369735 (+) True AMCG00020587
AMCG00020588 mRNA downstream 113681 25376181 ~ 25392861 (+) True AMCG00020588
TU80336 other upstream 168124 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 176188 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 770764 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1197286 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 1199001 24051989 ~ 24053877 (+) False G63939
TU80525 other downstream 288411 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 2153496 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3611130 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3746163 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 4202064 29464564 ~ 29465712 (+) True G64979

Expression Profile