RNA id: AMCG00020583


Basic Information

Item Value
RNA id AMCG00020583
length 2829
RNA type mRNA
GC content 0.44
exon number 17
gene id AMCG00020583
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25349729 ~ 25360490 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGCCTGTATAGAAGATGtcgggaaaaaacaaaaacaaacacattacacGGCACTCCAGGCTTCGACATGAGAGGGACATGGATGGCATTGAGGAGGAGATGATGGCCACCGTTTCAGACCACATGGACCTGCTCTGCTGTCACAAagtccaggactccttgttgaGCTCTGCCAGCAGATTCACAGACTATCGAGGGATATTCAATTGGTGTGTCATCATGCTGGTCCTCACCCATGCCCACCTCTTCCTGGAGAACTTCATACAACATGGCTTTTTGGTGGACCTGAGGAAAGTCATTCAACATCTAGTGGAGGACAACTACAACTGGCCCTCTGTCTACCTGATTCTTGCTGCCAATGTATTTGTGGTCGCCGCTCTGCTGCTTGAGAAGTGGCAGGAAAAGGGCTTTATATCACCAAGGGTGGGCAGGGTCCTGGAGGTGGGAAACCTACTGGTGTTGATGGGGTTTCCTGCAGCTGTGATCCTGCACAAATCCACCTCCATTACTGTAGGCGGGtcaatgctctctctctgtgtctacACCATCATCGCCCTCAAAATGTACTCCTACCATGACGTCAACAGCTGGTACCGTCAAGGGCACCTCAGTAACTCAGCTGGGATGAAGAAAGAGACCAAGCAGGAGAGACGGGAATATCAAGACCAACTGACACTGAAAGATCTCTATTACTTCTTGCTGGCTCCTACGCTATGCTACCAGCTGGATTTCCCTCGCAACGAAACCATCCGCAAGAATTTCCTCTTTCAGAGACTTATGGAAATGCTCATTCTTATCCAGCTCATGGTGGGGATAGTTCAGCAGTGGATCAGCCCAATCATCCAGAGGTCAGAGTACACCTTCACAAATATGGACATGACTGCAAAGATTGAGCACCTGATGGAGCTAGCTGCACCCAATCATTTCCTCTGGCTCATCTTGTTCTACCTTTTCTCGCACTCCTGCCTGAACTTCACTGCCGAGCTGCTGCGCTTTGGAGATCGCGAGTTCTACGGGGACTGGTGGAATGCCGATAACCTGAAGGCTTTCTGGAGTAAATGGAATGCTCCTTTCCACAAATGGAGTTCCAGGCACCTGTACAGACCCCTGATACAGAAGAGACTCCCCCCTCGCAAGGCAGAGCtcattgtgtttgtgatgtCTGCAGCCATGTGTGAGTACCTTATTGCCATCCCCCTGCATATGTTTCGCCTTTGGATCTTTGGGATTATGATTCTAGAGATCAAAGTGACATTTTTCCTTGGCCACTACTTCACAGGGAACTATGGCAACGGCATGGTCTGGCTGTGCATGCTCCTAGGCCCCCCGATCGCAATACTGACCTACTTCCATGACTATTACATGATGAACAGGGACCAATCCTCCTGGATACTCTATTAACCCCTAGCACAGGACGACTGCACTGCAACATTGCAGGCAATTAAAGACTCTTCGGAGGAAAGCTGGTAGCTTGTTCAGTGTACTGTCTATTGTGTCTAATAATTTCTAAGCTATATCAagagtttttgtttctgtgggtTCCCCTTGATTTATCTGTGCCTCTTTAAGGATTCATCTGGTACCAGTTGAAGATGTCAACTAAGAGCACTTGTTCAATGTTGAGGTGTTTTGCTGTATAACAACTAAATAGTCCAGTAAAACCATCCAAGCCTTTAATTTTGAATTTACAAACCTACTGCCTGCAAGTGACACTGCAAGATTTAAATTAGCAAGTAATATACTTGTAATGGGAAGCAAATAACTGGTACTAATTGAAAAACACACTTCTCAGTTGTACATGAGTTACACACAATTACTCAAACAGGAATCATCTAAATGTTTGATATAGAGTAGAAAAGTGAGGAGAAGATGTTGAAATTCAGCAGCTGCGTCTATTACAGAGCAGCTAGACTGCACTGACTGCCAAGAAGCAAGGTAGCCCATCCAAGGTCAAGTTTGGTtggtaatgaaaaacaaaaggtatTTTTTCAACAAACCTCTAGGGCGAAGCTTGGTCTGGTGACAGCTGCAAGAGTCAATTGATGGATAGCCTAGTTTGTGCTAGGATTCATTTTTTTGATTGCCATTATAAATCCCTACAATACCTCTATGCTTTATGTCTCATTACAGACTGTTTGGTTTAGTGTgaatttttcaataaaaactcTCCAGTGTGACAGGCCAATAAGTTGCCTTAGTAAATCAGTTGAGGTCTTATAACTGACTGTTCTTTCTATGCCATTCTGATCTAAGACTTTTAAAGTGATGTCTAACATATGTTTCAAAGCATTTTCAGATTTCTGAACAcatttatgaaattaaatgtctgtCAATTGTGGGATTAATATGGAGGAATCCCCTGAAGAGATAACTAAGGGAAtgctgtaatataatgtaagGGGCCACAAAGCTTCTGTGAGTGGTCGCCTGTTTGCCTGCTGTTGTGAGAGTGTGGAGTGCAGAGTCAGGAGTTCTCAGATGCATCTCGTTTGAGGGCTGCTGTGTGACACTCTACTCCACCTGAAGAAATCTGTGCAAGTCTGGAAAGCTGTAAGGGGTTGGCTGCAGCTATGCACCAATGAAAGGGTGCAGAGCTTTCCAGTAACCTACTAAGCCTAGTGGGAATAACCCCTAAAACTACTGCTGCCCTCTTGTAAGTGGAAGTGAATGACATCTGACTTTGTACTACACATTGAAATGGTCTTAACAAAGctgtattaaacaaatacattaatgaattagTTAGATGAGTAACAtgtcaaaacaaatgcagtaaGGGATGTGTTAAATGTTCCAATAAAGCTGATGTTCCTCAACAGGGTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80435 lncRNA upstream 16047 25332620 ~ 25333682 (+) True G64300
TU80436 lncRNA upstream 16552 25332259 ~ 25333177 (+) False G64300
TU80432 lncRNA upstream 19171 25330081 ~ 25330558 (+) True G64297
TU80399 lncRNA upstream 83522 25263406 ~ 25266207 (+) True G64269
TU80398 lncRNA upstream 83578 25263406 ~ 25266151 (+) False G64269
TU80482 lncRNA downstream 98728 25459218 ~ 25459796 (+) False AMCG00020585
TU80515 lncRNA downstream 175263 25535753 ~ 25536047 (+) True G64362
TU80531 lncRNA downstream 208900 25569390 ~ 25571762 (+) True G64378
TU80553 lncRNA downstream 280103 25640593 ~ 25643374 (+) True G64394
TU80568 lncRNA downstream 361443 25721933 ~ 25728334 (+) True G64406
AMCG00020584 mRNA upstream 9928 25336875 ~ 25339801 (+) True AMCG00020584
AMCG00020579 mRNA upstream 73744 25269543 ~ 25275985 (+) True AMCG00020579
AMCG00020580 mRNA upstream 87229 25252878 ~ 25262500 (+) True AMCG00020580
AMCG00020578 mRNA upstream 110409 25221825 ~ 25239320 (+) True AMCG00020578
AMCG00020577 mRNA upstream 143158 25188322 ~ 25206571 (+) True AMCG00020577
AMCG00020587 mRNA downstream 6359 25366849 ~ 25369735 (+) True AMCG00020587
AMCG00020588 mRNA downstream 15691 25376181 ~ 25392861 (+) True AMCG00020588
AMCG00020586 mRNA downstream 45144 25405634 ~ 25458095 (+) True AMCG00020586
AMCG00020585 mRNA downstream 98606 25459096 ~ 25472886 (+) True AMCG00020585
AMCG00020593 mRNA downstream 127457 25487947 ~ 25492295 (+) True AMCG00020593
TU80336 other upstream 264975 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 273039 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 867615 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1294137 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 1295852 24051989 ~ 24053877 (+) False G63939
TU80525 other downstream 190421 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 2055506 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3513140 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3648173 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 4104074 29464564 ~ 29465712 (+) True G64979

Expression Profile