RNA id: TU80553


Basic Information

Item Value
RNA id TU80553
length 2782
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G64394
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25640593 ~ 25643374 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgctTACATCGTACAGTACTCTATAAAGCAGCACACTGGCATAAaaagataaacattttatttacagaaactTGCAGCTATGCATTTGTAGTGTACATTTGACATTCAAAATTCAGGCTAACTTAATGTTAGTTCCAGTACAAATGAGTTTAATACACTTCAGCAGGAAAACATGTTGCATATCTTTGCATACAGATTGAGCAATTGAAGAGCTCAGACCACAGGATTCGGCTTCACCAAGAACCTTCCCTCCCGCTCTACACTCAGGGAATCTTGATGTAAAGATGTAAATATACATGGAGCTGCTGAGTGACACTCCACTTCTATTAAACTGCAAGTTCCTCTACGCTGATTAAATTATGATGCAAACTTGTTTTTATGGAAGGAAATCATATACATCACCCCCCGCCTCCCTGTTTTTCATGCAAACTACCCTTTTTACCCTCTAATTCATAAAAtggacaaacaaaaccaaataaaaaataaaaagccaaaaaATATATCTCCTCATCAATACACTTATATATAAATTAGTCTAATATTATATCTGAGTAGTAAAGAGGTTGCTATGCAAGTTCTCTACATCTTTCCATTATACAACTGCTTGCTGATGCACTCCGATCTTTTAAGATTGAATCGCCCCAAGGCAGAGAGCGTTATTGGCTCATCAttgaaattcaataaaataaataaaatggtattCACAGGGATTCCAGTGGATTTATCCTTCCCATGGTTGTTCAGGTATGTCACTTCACCTCAGTAGGAGAGAGGAGCCAAACCAAATATACAACGGAGATCTTCTCTCACGCCCGGCGTGCAGTCATTTCACATGATACTACAATTCAGTCAAGAATTCtgcttgaaaaaataaataacaatttgcaGATCTAAACTACATACATTCAGTAGTGCACTTACCATTTTTGGAAGAAGCAAGCActgtttaaaaattatatacttGAATCAAGTTAGATgtctacattttgtaaatatgaactggaattaatagaaataattaaaaaacaacactattgTCTACATGGAAAAGTATCAATGCCAGTGTTTGTAATGCTTACATTTACAAATGCGTAACAAAATCCACAGCCAACAACCCCCTGTGCCAGGAAAGTTACATGgatttacaacaaaaaataatctctgTGATGAATGATCTTGGTATAAATGAGGTAATTGCCATCCAGGTTTTGCTTATTTCAGATCTTTGTGGGTTCCTTGCCAAGTGATTCCTCGGGCAAATGCTGAGACAGTTACGGAGAGAACATTTGACATGTCTGTCATTTTAATATGCCATGTTACCTGAAGAAGtcaacatttttcataaatgAACAATGAACCTGAAAAGGTCTTCTGTGAGATAGTGTGCAAATGTGGGTGGGTACTGATGTGCAGTATAtatggacttttttttaaatatgcttcaGAATTGACATGCTATAACAAGTGAGGAAGCATTAAATAtctatgcatacacacacaaattgtcaacaaaaacatcaaaagtacactgaaaataattgaaacagAATGAGTATTGTACATCTCTGTGGATTGCAGTGTTACGAATAAGCAGTGCACATTGTTAAAGCAACATCCTGAACAGTAACATCAATACATTCATCTCCcagatttcaaaaacaaacccTGAGAAACCACAGCAGTTTTTATAACAGACTACAGAATAATAAATTAGACAATTCTTGTTTTTCAGAAGGACGTTCTGAAAGCAGATGTCAAAACATTGTCCTGCTTGTGATCAATCACCTCAGATGAGTCAAAATcatattcatgtaaaatgtgGGACTGAGGTTGTTGCTTTTTGAATTTTTAAGAGGGGGGGTTGACAATTATGGAACAACTGTACAGCAGAACACTGTTACCGAAGGATTTCCACATGGGCCAGGAATGATCGGTATTCTAGGGACCAACAGTGGTTCATCTATAATAGCCCTGCATTTTAGGTTAATCTGCTTCTCATTGGAAACCCGGTTGTAGCACTGTGCAGCTCATCTTTGCTGGGGGCCTGTGTTGTTGTAGTTGGTGGCGACGTGGTTGTAATTTTGTGCTACTGGCTCTCAGGAGATGACACTTGAGATTTCCTGCTGGTTTCTCAAGAGCCGTCTGAGCAAAGAGTTTGAGGCATATTCAACTATGCAACCTGGACAAAGATAATGGGACTGGGGCTGAGTTCAAAGCTCCTATGGCAaccccaaaacacaaaacaaacaaaataaaggctCTCAGTTtccaagtttgtttttaaatcccatGTCCTCTACTGATTTGCTTTTGTGCTAGAGCTCAAATTGGAAAGTTTTTCTAAATACCTACACTGGTTTATCACAAGGAATTGTatgacacagcacagcactgcaaaTCTGATCTGGTCTGTGTACATTGCCTTCTGTTAAAGTGGATGCAGAAGTGAAGCCCCGAGGCTCTGGCTTAACTGTGTTTTGTAAGACTATTCAAAAGataggcttaaaaaaaaaaaaacatggaaaactgAGAGGTAATACAATTTtacatggtttgttttcatcaatGTACTGATATTACATcagaaataaagcaataataatcacaaagcACAAGGAAATctctaaaatgtaatatatgctCTACAGAGTTTCTAAGTTCACCTACTATGTGGTCAAGAGGAAATCATGTAAGAGATGAATACGAacacaacatgaaaataaatttcaCTCTGGTTACCTTCTCTGGATTACATGTGCAGTGGGCTTTTGTGCAGGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80531 lncRNA upstream 68831 25569390 ~ 25571762 (+) True G64378
TU80515 lncRNA upstream 104546 25535753 ~ 25536047 (+) True G64362
TU80482 lncRNA upstream 180797 25459218 ~ 25459796 (+) False AMCG00020585
TU80435 lncRNA upstream 306911 25332620 ~ 25333682 (+) True G64300
TU80436 lncRNA upstream 307416 25332259 ~ 25333177 (+) False G64300
TU80568 lncRNA downstream 78559 25721933 ~ 25728334 (+) True G64406
TU80576 lncRNA downstream 133033 25776407 ~ 25778982 (+) True AMCG00020603
TU80613 lncRNA downstream 176017 25819391 ~ 25819782 (+) True G64436
TU80641 lncRNA downstream 250776 25894150 ~ 25895525 (+) True G64457
TU80673 lncRNA downstream 291531 25934905 ~ 25940113 (+) True G64478
AMCG00020599 mRNA upstream 30203 25601120 ~ 25610390 (+) True AMCG00020599
AMCG00020600 mRNA upstream 51842 25579705 ~ 25588751 (+) True AMCG00020600
AMCG00020596 mRNA upstream 108230 25531176 ~ 25532363 (+) True AMCG00020596
AMCG00020593 mRNA upstream 148298 25487947 ~ 25492295 (+) True AMCG00020593
AMCG00020585 mRNA upstream 167707 25459096 ~ 25472886 (+) True AMCG00020585
AMCG00020598 mRNA downstream 38242 25681616 ~ 25687176 (+) True AMCG00020598
AMCG00020603 mRNA downstream 118761 25762135 ~ 25777517 (+) False AMCG00020603
AMCG00020609 mRNA downstream 138674 25782048 ~ 25783248 (+) True AMCG00020609
AMCG00020608 mRNA downstream 166792 25810166 ~ 25811675 (+) True AMCG00020608
AMCG00020606 mRNA downstream 196330 25839704 ~ 25854564 (+) True AMCG00020606
TU80525 other upstream 87273 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 555839 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 563903 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1158479 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1585001 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1772622 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3230256 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3365289 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3821190 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3882341 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile