RNA id: TU80613



Basic Information


Item Value
RNA id TU80613
length 392
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G64436
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25819391 ~ 25819782 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCAGTTTATGTGTCTGATGTAGAAAAGGGAAACAGTCTTGACAGTAGTTGCATACCTCAATGTTATACTGGGTGAAAATCACACAAGAGGTTGATGTGCTTATATACAGGTGAGGTGGGTAAAAACAGCTCTGATATGTTTTCTGTTAAGTGTGGTGAGGGGTGGCGCAATTCATCACCTGCTCTGCCAGCCAACCGATGTGCTTGACTTCTCTGTTGCAGCTGGTGTTGCTGGAGCCCAACATTGAGTTGAGCTGGGCCAGGACTTGAGGCAGCAGGGCAGCAATGTTGGTGTGGATGGCAGTAAACCAGGAGTGCGCTGAGGGGCTGTCCTTACAGCGCAGGACCACGGTGTTCCTGCCATCCGGAGAGTGCAGCTCGATCAACCTGTT

Function


GO:

id name namespace
GO:0007599 hemostasis biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU80576 lncRNA upstream 40409 25776407 ~ 25778982 (+) True AMCG00020603
TU80568 lncRNA upstream 91057 25721933 ~ 25728334 (+) True G64406
TU80553 lncRNA upstream 176017 25640593 ~ 25643374 (+) True G64394
TU80531 lncRNA upstream 247629 25569390 ~ 25571762 (+) True G64378
TU80515 lncRNA upstream 283344 25535753 ~ 25536047 (+) True G64362
TU80641 lncRNA downstream 74368 25894150 ~ 25895525 (+) True G64457
TU80673 lncRNA downstream 115123 25934905 ~ 25940113 (+) True G64478
TU80711 lncRNA downstream 274881 26094663 ~ 26096921 (+) False AMCG00020621
TU80767 lncRNA downstream 375431 26195213 ~ 26197405 (+) True G64555
TU80768 lncRNA downstream 381282 26201064 ~ 26202040 (+) True G64556
AMCG00020608 mRNA upstream 7716 25810166 ~ 25811675 (+) True AMCG00020608
AMCG00020609 mRNA upstream 36143 25782048 ~ 25783248 (+) True AMCG00020609
AMCG00020603 mRNA upstream 41874 25762135 ~ 25777517 (+) False AMCG00020603
AMCG00020598 mRNA upstream 132215 25681616 ~ 25687176 (+) True AMCG00020598
AMCG00020599 mRNA upstream 209001 25601120 ~ 25610390 (+) True AMCG00020599
AMCG00020606 mRNA downstream 19922 25839704 ~ 25854564 (+) True AMCG00020606
AMCG00020607 mRNA downstream 35306 25855088 ~ 25861732 (+) True AMCG00020607
AMCG00020616 mRNA downstream 57473 25877255 ~ 25885079 (+) True AMCG00020616
AMCG00020611 mRNA downstream 100857 25920639 ~ 25932142 (+) True AMCG00020611
AMCG00020610 mRNA downstream 152751 25972533 ~ 25989687 (+) True AMCG00020610
TU80525 other upstream 266071 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 734637 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 742701 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1337277 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1763799 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1596214 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3053848 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3188881 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3644782 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3705933 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile