RNA id: AMCG00020598


Basic Information

Item Value
RNA id AMCG00020598
length 2638
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00020598
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25681616 ~ 25687176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaataaataaatacacaacagcCTACTTTTACCAAATAAAAAcgtcattttaaaaatactttttaaaagtccAGGAGCACTGTTTTCCTGTCCCACACTCATGTTAGaggagttttatttttcttatcgCTGCTAGTAAAAGTGGGCATGAAGCGGGACCGGCGCGGTCGGCCGGTGGCTGCGTCTCAGCAGACCCGGACAGGACAGCCAGCCGCGGGGAGCAAGCGACCTGGCCGACGCGGGAGACCGAGGTCAGCGGCCAGGAAGGATGTATCCGGGGATCGGAGCGAAGGCAGCTGCAGCGGGCCGGAGGAGAGCTGTGCTGCAGGGCAGCAGAGCAGGGACGGGCTCGCCGCTTCAGATGTGGGAGTAGGTGGTGCTGAAGGCGGATCAGAGCAGTCGGGCTCAGGGAGACTCAGCACAGCATTCTGCCGTCTGTGCCATGGGAAATTCTCACCGCGGAGCCTGAGGCATGCCTTTGGGAAGCTCCCGGCAGAGCTAGGGCGGGGGCCAGGTGTCGACAGGAGGCCCCGGACACCCCAGCTGTTCTTCGCCGATTTCCAAAGGCTGGTGGGAGTGCCGGTGACCCAGGACCCCCTGCTGTCCCAGTTTGTGTGCAAGAACTGCCACAACCAGTTCTACAAATGTCACAGCATCCTGCGTACATTCGTACAGCGTGTCAACCTCTCACCCTCTGTGAAAGCCAAGGCAAAGAACAGTGGAAATTCCGTGTCTTCACATTCAACTGTAGAAACTTCTGCGATCAATCAAGTGATCACGTCCAGCCCGCAGTGTCTGTACAGTCTGGTATCTTGGACACACCAGCACGCGGGGGGGTGCCAGTCATGCCCAGGGCTGCGGGAGGTGTTGGCGGGGGAGTACTGTGGAGCCGTGCGGGCCGTGTGGAGCTGTGTGGATGGGCACCGCTACATCATGGACACGGCCTCAGACCGCACCTCCGTGACGCTGGACCTGGCCACAGAACCAGTGAGCCTGGGGGAGCGGGCGGAGGGCACAGGGAAACCTGCCTCGGCGAACCCTGTCCCAGAACATGGCCCGCCACCGCTGAACACTAGCACAGGGCCCAGGGGTAACAGCAACTCCCAGCCCGCTGGCCCAGTTGCAGCTCCACACACCCAGGACATCCCTGTACACCATCCACAGAGTGACAAGAGCACTCCGGAAACTGCCTGCCTCAACAGCACTGCAGGTCAGCTTGGCAGTGAGAAGCCCATTGCAGTGCCAGCAGAGCCACTGGATGGGGTAGAGGACAGCGATCTATCCGACAGGGAGTCCTTGAGCGAGGATGAAGATGAAGACAAGGGGAAGAGTGGTTCATCCGATGAGCTGTTTGAGCCCTATCCAGAGAAAAACAGAATGTCACCTAAAAAGAATGAGAGCAAAGAAGCCAAGAAGAAGATGGAACCAAAAGTGAGGAAAAAGCCCGGGCCCAAGCCAGGCTGGAAGAAGAAGATCAAGACTGAACGAGAAGAGCTGCCTACTATCTATAAATGCCCTCACCAAGGCTGCATCGCTGTCTACCGGGGGGCTGACGGCATGAAAAAACACATCAAAGAACACCACGAAGAGGTGCGAGAGAGGCCCTGTCCACACCCAGGCTGTAATAAAGTCTTCATGATTGACCGATACCTGCAGCGCCACGTAAAGCTTATTCACACAGAGGTGCGGAACTACATCTGTGATCAATGTGGCCAGACTTTCAAACAGCGGAAACACCTCTCTGTCCATCAGATGCGGCATTCGGGGGCAAAGCCTTTGCAGTGCGAGGTGTGTGGCTTCCAGTGTCGGCAGAGGGCCTCTCTGAAGTACCACATGACCAAACACAAGGCTGAGGCGGAGCTGGAGTTCGCCTGTGACATGTGTGGGAAGCGCTTTGAGAAGGCCCACAACCTCAACGTGCACATGTCCATGGTGCACCCCCTCACACAGAACACTGACAAGAGCAAGGCCTACAGGGAGCCCATCGGCTTCGTGCCTTCACAGAACCCCCCAGTGTTGGAGACCATCTCGGACAGTCTAGCCCAGTCACTCATCCAGACGAACACCAGCTGAGACGCGAGCCTGGGAGCTCCTGCTGCACTTTGGTAGAAGATGCAATAAAAGCCTAGACTCCAGCTACCGGTTTCCAAAAGAGCCACAGTACTACTACCGCATGAAGATGCATCGAATCAGTTTCTAAAAAGGCCTGACTTCCTGTTCCGAGAGAATGCTGTAGAGTACAAACCGCAGTGTACGGGTGAGAGATTAAGGGAAACTGCTCCTTAAAGGCGACGCACAGTTCCAGCCCACATGTCCACTGATGACTAGGATTAGCTGATAGTGAAACATGTTTAAGTGCTGCCTCAGTTTTTATATCACTTAGTATTTTTACAGTGACTTTGTTCTACAAGCAGgattacattacaaacaaaactaCTGTTTCTTTATGAATGGCAATTCATATCTTGAGGTTTAATACTTCATACCTATTTCAGGACAGTTCAAATACACACTACTACAAAAATAGGAATGCAAATGAGAAATCAGTCAGGTTTTAATTCACTAATGGATCCTGTGCTCTAGTATATCTTGCAATAtgactgcatttgtgtgtgtatgtctgtctgtctatatata

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80553 lncRNA upstream 38242 25640593 ~ 25643374 (+) True G64394
TU80531 lncRNA upstream 109854 25569390 ~ 25571762 (+) True G64378
TU80515 lncRNA upstream 145569 25535753 ~ 25536047 (+) True G64362
TU80482 lncRNA upstream 221820 25459218 ~ 25459796 (+) False AMCG00020585
TU80435 lncRNA upstream 347934 25332620 ~ 25333682 (+) True G64300
TU80568 lncRNA downstream 34757 25721933 ~ 25728334 (+) True G64406
TU80576 lncRNA downstream 89231 25776407 ~ 25778982 (+) True AMCG00020603
TU80613 lncRNA downstream 132215 25819391 ~ 25819782 (+) True G64436
TU80641 lncRNA downstream 206974 25894150 ~ 25895525 (+) True G64457
TU80673 lncRNA downstream 247729 25934905 ~ 25940113 (+) True G64478
AMCG00020599 mRNA upstream 71226 25601120 ~ 25610390 (+) True AMCG00020599
AMCG00020600 mRNA upstream 92865 25579705 ~ 25588751 (+) True AMCG00020600
AMCG00020596 mRNA upstream 149253 25531176 ~ 25532363 (+) True AMCG00020596
AMCG00020593 mRNA upstream 189321 25487947 ~ 25492295 (+) True AMCG00020593
AMCG00020585 mRNA upstream 208730 25459096 ~ 25472886 (+) True AMCG00020585
AMCG00020603 mRNA downstream 74959 25762135 ~ 25777517 (+) False AMCG00020603
AMCG00020609 mRNA downstream 94872 25782048 ~ 25783248 (+) True AMCG00020609
AMCG00020608 mRNA downstream 122990 25810166 ~ 25811675 (+) True AMCG00020608
AMCG00020606 mRNA downstream 152528 25839704 ~ 25854564 (+) True AMCG00020606
AMCG00020607 mRNA downstream 167912 25855088 ~ 25861732 (+) True AMCG00020607
TU80525 other upstream 128296 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 596862 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 604926 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1199502 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1626024 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1728820 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3186454 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3321487 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3777388 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3838539 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile