RNA id: TU80331


Basic Information

Item Value
RNA id TU80331
length 372
lncRNA type intronic
GC content 0.54
exon number 1
gene id G64220
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25064001 ~ 25064372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcaacagggtcatgggcggccaaggctcatcgctcatggggagcgaaggctggcccgtgtggtctgatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcattgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcacctacaatgggcacttgagcatcagaactggaccaaggagcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80321 lncRNA upstream 3672 25058169 ~ 25060329 (+) True G64210
TU80291 lncRNA upstream 117791 24945261 ~ 24946210 (+) True G64185
TU80261 lncRNA upstream 252190 24809964 ~ 24811811 (+) True G64158
TU80222 lncRNA upstream 367192 24696602 ~ 24696809 (+) True G64122
TU80221 lncRNA upstream 368447 24691997 ~ 24695554 (+) True G64121
TU80335 lncRNA downstream 13770 25078142 ~ 25080879 (+) True AMCG00020573
TU80339 lncRNA downstream 27420 25091792 ~ 25093030 (+) True G64224
TU80341 lncRNA downstream 32110 25096482 ~ 25096897 (+) True G64226
TU80398 lncRNA downstream 199034 25263406 ~ 25266151 (+) False G64269
TU80399 lncRNA downstream 199034 25263406 ~ 25266207 (+) True G64269
AMCG00020576 mRNA upstream 32044 25030683 ~ 25031957 (+) True AMCG00020576
AMCG00020570 mRNA upstream 93178 24951556 ~ 24970823 (+) True AMCG00020570
AMCG00020571 mRNA upstream 120710 24937738 ~ 24943291 (+) True AMCG00020571
AMCG00020569 mRNA upstream 147093 24891302 ~ 24916908 (+) True AMCG00020569
AMCG00020567 mRNA upstream 183309 24867971 ~ 24880692 (+) True AMCG00020567
AMCG00020573 mRNA downstream 14492 25078864 ~ 25084873 (+) False AMCG00020573
AMCG00020582 mRNA downstream 88479 25152851 ~ 25161527 (+) True AMCG00020582
AMCG00020577 mRNA downstream 123950 25188322 ~ 25206571 (+) True AMCG00020577
AMCG00020578 mRNA downstream 157453 25221825 ~ 25239320 (+) True AMCG00020578
AMCG00020580 mRNA downstream 188506 25252878 ~ 25262500 (+) True AMCG00020580
TU80130 other upstream 581887 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1008409 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 1010124 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1989056 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 2691241 22358828 ~ 22372760 (+) False AMCG00020487
TU80333 other downstream 9685 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 13770 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 486539 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 2351624 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3809258 28873630 ~ 28874072 (+) True G64887

Expression Profile