RNA id: AMCG00020571


Basic Information

Item Value
RNA id AMCG00020571
length 1362
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00020571
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24937738 ~ 24943291 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCAGACTGTGATGCTCATGCTTCTGGTGCTGCCTCTCAGAGCAGTCAGCCCCCAGCGTGTTATAGGAATCCGAAGGAATGAGACTTGTGAGTGCGGTGTGGATGTCAGTGCCTGGGACTTCCCTGTGCAGAGGTTTGAGGAGGCTACAGAGCTGCTACAAAGCTGTGAGACCTCGCTGGGGGCTCTGCAGGCACAGGTGAATTTCACAGAGGCTAAAGTCCCTGAGATATCTGCCACTCTAGAGAACATCACAGAGGAGCTGAAAGAGTTTGAGTACCTTAACAAGAAAAGCCTGTACAACAGACTCAACCTCCGCCAGTTGAATAATGAACTGAATATGCTGGAGATACAGATCCAAGAAGAACAGCAGAATATGGCCATGGACCAATCCAAAGCACAAGAGCTAACTGACGAGTTAAGTGACATTCGGCAGAGAGTGCAGGGTCTGCAGAGACTGGACAAGTTTAACCTGCTGGCCCTCAGGGATAACCTCCGCACTCTGAAGAACAGCTTCGAGTCCTGCAGGTCCTTTGGCAAGGGCCGGCCAAATCAATGCTTCAATGGCATGTTGTCCAATATCAGCTCTCCTGTGATCACTCAGCTCAGCCCCCATGGTAAGTCTTACCCCTATGGCTCCTGGGGCAGGGAGACCAAGAATGAGAGCATGGAAGTGTACTGGGTTCAGCCATTGACTGGAAGTGATAAGTATGGACACATCCTGTATATCTATTTATCTTATGCTGACTTCATCATGTCAAAAAACCATAAAGAAATCACAGTGAGGCCCTCCTACTCCTACACCAATGCCATCCAAGGCCCTGGTACCATCCTGTATGATGGGGCCCTCTATTACAACTGCTATAGGTCACCCAACCTTTGTAAATATGACTTGAACACAGAGACCATTATTGAAGCTCCCTTGCCTGAGGCTGGCTACAACGACAAGTTTCCATACTGCTATTACAAATGCTGTGATTATACAGACATAGACTTCTCGGTGGATGAAAGTGGGCTTTGGGTCATCTATGCCACGGAGGAGAATTATGGAAATGTAGTGTTAAGCAAGCTCAATAGCACTCTGGGGGTGATTCAAACCTTTAGGACCAGGCTGTTCAAGAAATCAGTGACCAACACCTTCATGGCCTATGGTGTGCTGTACGCCACCCGCTACATCAGCACCTATCGAGAGGAGGTGTTCTACGCGTTTGATACGGTGACGGGCCGAGAAGCCAACGCCCTCCGTCTGCCCTTTGAGAAGGTCTCAGACCGCATCCAGAACCTGCACTACAACCCCACTGACCAGCGCCTCTACCTCTACAATGATGCCTACATGATGGCCTATAACCTCTACTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80261 lncRNA upstream 125927 24809964 ~ 24811811 (+) True G64158
TU80222 lncRNA upstream 240929 24696602 ~ 24696809 (+) True G64122
TU80221 lncRNA upstream 242184 24691997 ~ 24695554 (+) True G64121
TU80159 lncRNA upstream 339951 24594130 ~ 24597787 (+) True G64069
TU80134 lncRNA upstream 372246 24520836 ~ 24565492 (+) False G64048
TU80291 lncRNA downstream 1970 24945261 ~ 24946210 (+) True G64185
TU80321 lncRNA downstream 114878 25058169 ~ 25060329 (+) True G64210
TU80331 lncRNA downstream 120710 25064001 ~ 25064372 (+) True G64220
TU80335 lncRNA downstream 134851 25078142 ~ 25080879 (+) True AMCG00020573
TU80339 lncRNA downstream 148501 25091792 ~ 25093030 (+) True G64224
AMCG00020569 mRNA upstream 20830 24891302 ~ 24916908 (+) True AMCG00020569
AMCG00020567 mRNA upstream 57046 24867971 ~ 24880692 (+) True AMCG00020567
AMCG00020568 mRNA upstream 83330 24849908 ~ 24854408 (+) True AMCG00020568
AMCG00020563 mRNA upstream 128472 24801317 ~ 24809266 (+) True AMCG00020563
AMCG00020557 mRNA upstream 181453 24747423 ~ 24756285 (+) True AMCG00020557
AMCG00020570 mRNA downstream 8265 24951556 ~ 24970823 (+) True AMCG00020570
AMCG00020576 mRNA downstream 87392 25030683 ~ 25031957 (+) True AMCG00020576
AMCG00020572 mRNA downstream 119082 25062373 ~ 25076688 (+) False AMCG00020572
AMCG00020573 mRNA downstream 135573 25078864 ~ 25084873 (+) False AMCG00020573
AMCG00020582 mRNA downstream 209560 25152851 ~ 25161527 (+) True AMCG00020582
TU80130 other upstream 455624 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 882146 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 883861 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1862793 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 2564978 22358828 ~ 22372760 (+) False AMCG00020487
TU80333 other downstream 130766 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 134851 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 607620 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 2472705 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3930339 28873630 ~ 28874072 (+) True G64887

Expression Profile