RNA id: XM_043252160.1


Basic Information

Item Value
RNA id XM_043252160.1
length 1644
RNA type mRNA
GC content 0.52
exon number 6
gene id inpp1
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1725270 ~ 1729839 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATTTCCGAGGCGTTTCCGTTACTTAAAACATCTGCGTTAAAATGCGCTGGCGTCACGCAGCAGAGATGAAGTGTGTGCGCGCTTTTAGACGGAGGATCGGTACAGGAGCCTGACAGACAGGAAGCGCTCGACTTCTACTACACCTAGACGCGACAGATCGAAAGGCCTCAGGTATGGCAGGGTTGTTGCGGCTGCTCCTGAGCGTGGCAGAAAAAGCCGCCAATGTGGCACGGGTCTGTCGACAGGAAGCACCGCTTTTTGAACTTTTGGTGCAGGAAAAGACCGGAGCcgacaaaaacaagaaatttgTCCAGGACTTTAAGACGCTCGCCGACGTGTTGATCCAGGAAATGATTCGCCATGACGTTTGTGCCCAGTTTCCGGAATTGAGCGGATTCATTCACGGAGAGGAGTCCAACAAGTTTGAGAATGGACTCGGAGAGAGCGTTACTGTGACGGTGTGCGCTCAGGAAGAGGACACCACCGCTCTGTTGGCTAAAGTTCTGGATGGCGATCAAAAGGCAGCGTCCCTCCTGACCAAAGTGATCCACCAGGACTTTCAGATTAGAGACGAGACGGCTGAATCCCTGCAGCTGTCGGTCAGCCCAGACCATTTGGCCATCTGGATCGATCCCATCGATGGAACAAGTCAATACATTGAAgggaaagaggaagaagagcCGGACGAAGGCTTTTGTTCATCCGGTCTCCCATGCGCTCTGGTTCTGATCGGGGTTTACTTGCGGTCCACTGGTCAACCGGTCATGGGCGTCATAAACCAGCCGTTCAACCGCAAGGACGCCACGGGGAAAGGATGGAAAGGCCAGCACCTCTGGGGCGTCTCGTATGGAGACGTGAACGTCTGCTCCTTCACGCACCGCAGGCCGCCGTGTCCGCAGAAGAAAGAAGGCCTGTCTGTGCTGCTGAGCTCCAGCGAGAGGCCGGCGGTGAAGGAGGCCCTGGCAGACATTCCCAGCAGCTCGCTGATGTACGCGTCCGGCGCCGGATACAAGATCCTGTGCGTGATCCAGGGTCTGGTGGACGTGTACGTGCTGTCCGAGGGCAGCACGTTCAAGTGGGACTCGTGCGCTCCTCACGCTCTCCTGCGGGCGCTGGGCGGCGGCGTGTCGGACCTGAGCGGCTGCGTCCGTGCCCACGTCTCTGGAAACCAGGGCCACAGCGCTGAACTCACCTACCATCAACCGCACGAGCAAAGCCAGGGGGTGGACCGATGGGCGAACCGAGGAGGGATAATCGCGTATTTGGACTCCGGCGTAATCGATAAAGTCGTGGCGGCACTCGCTGCGAAGATATGACAACGCAAGAGCTTAGTGTATGCAGGTGTAcgcttgagtttttttttttatgcataatctTACGTTGCTTACGATGCAATTTTTATGTTACGATTTAGTGGCGTAATCAAATATTAAGGATGTAGCTTTTtcaggaatatatatatatctacgtATCTACAGTGTATATATcagtaagttttatttttggaaggAAATGGTTCTATTCTTGAGACAGAAAGGAAAGCCATTCATTCTCATTGTAATGTTGtgtaaatgttacaaataatatCACGTTTTACACTTTCTGATGGTCACCTGAAATAAAGGAGAAAAGCACACTGAAA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116306 lncRNA downstream 44110 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 44110 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 211367 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 213038 1512005 ~ 1512232 (-) True G78573
TU116269 lncRNA downstream 213744 1510981 ~ 1511526 (-) True G78572
XR_006252086.1 lncRNA upstream 9861 1739700 ~ 1741018 (-) True LOC122354127
TU116534 lncRNA upstream 193866 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 753831 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 753856 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 757645 2487484 ~ 2487836 (-) True G78756
XM_043252411.1 mRNA downstream 9141 1704624 ~ 1716129 (-) False nab2
XM_043252410.1 mRNA downstream 9143 1704624 ~ 1716127 (-) False nab2
XM_043252414.1 mRNA downstream 24812 1697584 ~ 1700458 (-) True cnpy2
XM_043252413.1 mRNA downstream 25548 1697584 ~ 1699722 (-) False cnpy2
XM_043252581.1 mRNA downstream 28483 1680230 ~ 1696787 (-) True LOC122354408
XM_043251374.1 mRNA upstream 32736 1762575 ~ 1766074 (-) True LOC122353575
XM_043252505.1 mRNA upstream 48470 1778309 ~ 1786347 (-) True mmp19
XM_043251571.1 mRNA upstream 59913 1789752 ~ 1797665 (-) True pmela
XM_043252517.1 mRNA upstream 72906 1802745 ~ 1822748 (-) True timeless
XM_043251544.1 mRNA upstream 98568 1828407 ~ 1850291 (-) False gdf11
XR_006252099.1 other downstream 9141 1704624 ~ 1716129 (-) True nab2
TU116011 other downstream 502804 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 560929 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 561616 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 561836 1163363 ~ 1163434 (-) True trnac-gca_117
XR_006252142.1 other upstream 132848 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 135168 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 137431 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 139708 1869547 ~ 1869684 (-) True LOC122354692
XR_006252159.1 other upstream 142327 1872166 ~ 1872305 (-) True LOC122354709

Expression Profile