RNA id: XM_043251571.1


Basic Information

Item Value
RNA id XM_043251571.1
length 2967
RNA type mRNA
GC content 0.46
exon number 13
gene id pmela
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1789752 ~ 1797665 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACACTTCTTGGGTCTCTAGAGTAAAGCTGGGTCAGTAACTGGTGTCGTAGCTATCAATGCATACCCTGATGATGTGGAAGGCTCTCATCTTAATTCTTACCTTCTCTTCAGGAGCACTTTCACAATCAAGAACGCGCTTTGCACGTTATCGCTCATGGAACTCACACATGTATCCAGTTTGGAGGGATGGAGATCCCAGATACAGGGACTGCTGGAAAGGTGGAGAGGTGACATTTGAAGTCAGGAGTGATGGTCCTACGCTAACAGGAGCCAAGGCTACTTTCAACATTGATGTTCGCTTCCCTCAGAACCAGACAGTGCTTCCTGATGGACAGGTGGTGTGGGCAAGAAACTGTACAGTTAATGgaaCATCCTATACTATGGGCCAGACTGTATACCCAGAGTCCAGCATCCCTCGAGAATGGAGTGGTGTCTTTCCTGACAGGACACCCTTCACTAAGATCTCTAACAAAAAGCCCCGCTTCATCTATGTGTGGAAAACATGGGGAAAATACTGGCAGGTGGCTGATGGTCCCTCCTCTCTACTGACTATTGAAACAGACAATGTGCCTCTTGGTTCTTACACAATGGACATAGTAATTTATCACTGCCGTGGCAAAGACAAGTTTGTTCCCCTTGGTTATGCATCTACCCAGTTCTCTATCACCGaCCAAATTCCTTTTACAGTGACATTATCTCAGGTTGGTGACATCAATCAGGGTGACCAAAGCTTTATCCAGAATAGAGCTGTGTCCTTTGGCATTAATTTGCATGACCCTAGCTACTATCTAAGTGGGTCAGACATTACCTTCAACTGGGATTTTGGGGACAATAGTGGAACTCTCATTTCCAGGGAGGCTACTGTTACCCACACGTACCTTACAACTGGCTCCTTCAGGCCACAGGTGGTTTTGATGGCAGCCATCTCAAGTGGTTGTCAGCTCAGTCCAACTGCAGCATCCAGCGGTGCACCTCCTGTTCCTGTCACAGATGAAGCTGCAGCAGTGGAAAACATTGCGCTGACTGTTTCTCCTCCCATTGCGGAGGAAGGAGTTGCAGCTGATGTCACTGTCGCTGCCAACGACTTGGCGGTGTCCGCAATTGACAATGAAGCAGAATTAGTTAATGCTGCCCAAGAGGTCCCCACTGTTGCTGGAGACGCATCTGTGGCTGAGGCTGACAATACTGCCGCAGTGATGTTAGTTACACCTACAGCTGTTGAGGCTGAACCTGCGACAGTAGTTCCTGTGGCTGACACGTCCCCAGAAGAAGACGAGGTTATTATCGATCTGGCAGCCACAGTACTCCCAGCCCCTGCTGCTGTGGCTGACACGGCCTCTGTTCAGACAGTTATAGAAACAGAAGCACCAGCTGGTGATGCAGTCATCATTATCACCCCCGAGGCAGTGGTCACAGATATTGTAGCATCTGTCATACCTGCAGTTGAAGACACAGCTAACGAGACTGTTGCCGAAGTTAACGAGACTGTTGCCGAAGTCAACGAGACTGTTGCCGAAGTCAACGAGGCGACCGAAGCCGTCACTGGCATAACTAGCATACCCGAGGCAACAGTAAGTGAATTAGAAGCTGAACTGGTGGCAGGAACTGAAGCGACCCAGGCTGCTCTAGTCATTGCAAAGCGGCAAGCACCAGAAATGCCAGCAGAAACAAACTGTATGATTTATCGTTATGGTTCCTTCTCTACAACTCTTGCAGTTGTccAGGGAATAGAGAGTGTTGAGATCGTGGAGGTGAATAATGTGGTCGTTCTGGCCACAGAGCTGGAGCAGAATGCTGTAGATCTTACAGTAACATGCCAGGGAAGCCTGCCGAATGAAGTCTGCACTGTGGTGTCTGATGCAGACTGCACAAGTCCTGTTCAGGACCTCCAGTGCAATGCTGTGACTCCTGCCTCCGAGTGTCAGATGGTGCTGCGACAATTTTTCAACAACTCCGGCACCTTCTGCATCAACGTCTCTCTAACCAATGATGTCAGCTTGGCTGTAACCAGCGCAAAGCTCAGTGTGGCGATAGACACAAATTCATCGAGGAACACGGCTGGAGCAACACTGGGAGTCCTGGTTTTTATTTGCGCTCTGGGGGCCGTTGCATTTACATACAAGCGATTTAAGGAGTACCAGCCACTGAGGGATGATACAAGTGGCAGTTTCAGCTCTGGAAGAAGCTCAATGCCTTTAACGCTGTGGAACCTTCTGAGCCGGAGATCCGCTGCAGAAAGCCGTCCCCTCCTGCTTGGGCGAGTGGTGTGAAAAGCTGTCCACTTCTGCTTTAAGACATATTGCATAGAGAATAAATATGAACAACGAGGGCTTCATTGTACTGTATTAACAAAATGTCATATGTAATATGCCTCACAATATCTAAATGGTGTTTTATTGTATGTGGCAGTGTATTGTGTGTCGTTATGAAAAGTTGCAGATAGCTTTTCTTGGGTTGCAATGATCAGACTTTTTCCCCTTCGTTTGTTGTTTATGTCTAGGTTGTAactttaacaatgaaaaatatagtGTAGTGGACAGGACAATGCTAAGTAGTTTACTTACGTTATTTACAGAAGGTGGGGataaaaagtgcaaatgagGTTCGAAatgtataacaaaatatttacagggttttttttttacaaatgttaggAATTCACCCAGAGCATAGACATTAATCTATGCTCTTTAACAAAACCAAAGTACAGTGTTTGGCACTCATCCCTTACCCAACAGTTATGTGGATCTCTTTAGttatgtaaatgcaataattcTATAAAGGAACCCTGCTTGATAGGAATATTGTCATCATCAAATGGCAAATGTTTCAAGAAAAGCCTTGTGCCTGTTCAACATTTATGCAACATTAAGAAgctttatgaaataaatgtatatgtacattGAACTACgatgtaaatttacatttatgtttaatcgtcattaattaaaaatatgatgtaTTTT

Function

GO:

id name namespace
GO:0048069 eye pigmentation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252086.1 lncRNA downstream 48734 1739700 ~ 1741018 (-) True LOC122354127
TU116306 lncRNA downstream 108592 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 108592 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 275849 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 277520 1512005 ~ 1512232 (-) True G78573
TU116534 lncRNA upstream 126040 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 686005 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 686030 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 689819 2487484 ~ 2487836 (-) True G78756
TU116591 lncRNA upstream 898744 2696409 ~ 2696697 (-) True G78769
XM_043252505.1 mRNA downstream 3405 1778309 ~ 1786347 (-) True mmp19
XM_043251374.1 mRNA downstream 23678 1762575 ~ 1766074 (-) True LOC122353575
XM_043252160.1 mRNA downstream 59913 1725270 ~ 1729839 (-) False inpp1
XM_043252161.1 mRNA downstream 59918 1725270 ~ 1729834 (-) True inpp1
XM_043252411.1 mRNA downstream 73623 1704624 ~ 1716129 (-) False nab2
XM_043252517.1 mRNA upstream 5080 1802745 ~ 1822748 (-) True timeless
XM_043251544.1 mRNA upstream 30742 1828407 ~ 1850291 (-) False gdf11
XM_043251543.1 mRNA upstream 30742 1828407 ~ 1850291 (-) True gdf11
XM_043252730.1 mRNA upstream 85980 1883645 ~ 1889186 (-) True r3hdm4
XM_043252491.1 mRNA upstream 92014 1889679 ~ 1913851 (-) False abca7
XR_006252099.1 other downstream 73623 1704624 ~ 1716129 (-) True nab2
TU116011 other downstream 567286 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 625411 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 626098 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 626318 1163363 ~ 1163434 (-) True trnac-gca_117
XR_006252142.1 other upstream 65022 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 67342 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 69605 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 71882 1869547 ~ 1869684 (-) True LOC122354692
XR_006252159.1 other upstream 74501 1872166 ~ 1872305 (-) True LOC122354709

Expression Profile