RNA id: XM_043252730.1


Basic Information

Item Value
RNA id XM_043252730.1
length 2099
RNA type mRNA
GC content 0.41
exon number 8
gene id r3hdm4
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1883645 ~ 1889186 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTAGCATTAGCCATTAGCCATCGCGGCTGAAAGCTGATCAGGACCTTTTCTCCTTCaaaatttctttgtttttgtcaccGTCGCGTTTTTGTGAGAAGGCTGTGAGATGGTTTTGTTAAAAAGCAATAACAATGAGGAACAGGAGTTAATCCTAAACGAGCCATGCTGCTCATCTCTACCCAGCTCTCCTGCAAAACGTGTTTCTCCAGCCAAAAAGAAGCAGTTTTTTATAAACCAGGCCATTCGTAACTCTGACCTCACTCCAAGAGCCAAGGGCAAGAAGAGTCTGAGACGACAGGAAAACACTCGTTTTCTGGACAATCTTTTGGAACGGGACGAGTGCTCTAAAGAGGACGTTGAAGGACACGAAACAGCCTTGCCCACCATCTTCACTGAAGCCTGCACCAATGGAAACTATGTGGAGTACTGGAGTGATTTTATGAATCGTTCTGGGGAGGAGCAAGAGCGACTATTGGCTCTGCTGGAGGAGGAGGCCCAGAGGAGCCGCTCCGACAAGAACCATAAAGACCAAAGAGAAGTAAATCCTGCCTTCAGTGCTCAGGAATGCTTTCAGAGAATTGATCGGCGGCTCCGTGCGACGCTGAGACGCAGACAGATCCCCATGGGAGTGTTGGAGGGTCTGGAGTCTGATCTGCTGGGATTCTTCGTGGCACATCCACACTCAATTTACATAACCAAACTCAGCAACAGCTATGAGCGACTGCTGCTTCATGCTATCTGCCAGTACATGGATCTCACCTCTGCTAGCTCTGACTGTAATGGTGCTCGACAGACTGAGGTGGTCAACAAACAGGAAGCGTTCCTCCCTCCACAGCCTCTGCTCTCCGCCTACCTGGAGCAGTTGAGCTGAACCGCTGTAAACCAGTACCACTGATGCTCATCCAGCCACAACCGGCACCACTGCCCTTGAAAAATAATGCTTGACCTTGGCCTGGCCAGTATAAACTGTGTACATGACAATATGTCATTGGACCTGGCCTGCAGCCCTTGGCCTTTAGGAGAGATTGTGCTAACTAGATTATCGTACTCGGTGTCACTATCACTTtgattcagtttttaaatgcagtttggaTGTATTAGTAGATGTTACTGTTACTACAGCTGTCTTTataaatgattctttttttttccatgttgcAGACAGAATGTTACGTTTACTGTCACGGCATCCTTGTATAATAATAGAAGCGTAATTGTATGACTTCAAGAAGAGGCAGAAAGTTATTGTTTTTGATGTTCATCTTCACTTGAAAATGAATTGAAGCGGTTTTAGGAATTCACGTCCATCTCTGATGTTTGCAAAGGCCGCATAGAGTCGCTTTCAAAAACTCAGGCTCCTACAAAAGGATAACACCGTATAAATCAGCACATGCTTCACCAATAATATGACGGTTATGTAGTTATTGTACATTCATACCTGTGTGCACAACTTTTTACAATTCACATACATTTGATTTGTGAAGACTGCTAATTTACTTCAGCCAATCCTGCCTGACAACTGAAGAGTGTTAAGTAGACCTTTTATAAGCAACACTCTAACTTGAATTTAAGTAGAAAGCAGTGTCTTGTTTGTTAATCTGTCATAATTAGGTCTCAcgtcatttttttccattaaggATCTGCCAACATGCACTTGCTACTATGCCTTACACGTATACGCCATATTTGTCAgtttagcatttttgtatttatatcttGAGCCTTTACATCAAGGTTATATATGGTTTACaaaatcttttaatgttttgtacCATCAAGAGTCCTGAGACACTTGAGCATTTATTGCATTGGTGTTTATAAccaaagtgtgtgtatgtgctgatTCTCAGGCATCATCTGTTGTGAATGTGGACTTTAAACAATTTCATTACTCATAAAATCACCTGAAAACCAGGTTTGTTTAAATCTTTCGAgagtgtttttgaaatatttataattgtgttaaaatatttgagTTAAATGCTATTTATACCATTATGGCAGAATATGAATGCATACAATAGAGCGCTTAATTGTGTTTAGTTTTGGTCTGTGGTGAGTATCTGTATTTAAGACAATTAAAATACCAAATTTTTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252086.1 lncRNA downstream 142627 1739700 ~ 1741018 (-) True LOC122354127
TU116306 lncRNA downstream 202485 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 202485 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 369742 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 371413 1512005 ~ 1512232 (-) True G78573
TU116534 lncRNA upstream 34519 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 594484 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 594509 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 598298 2487484 ~ 2487836 (-) True G78756
TU116591 lncRNA upstream 807223 2696409 ~ 2696697 (-) True G78769
XM_043251544.1 mRNA downstream 33354 1828407 ~ 1850291 (-) False gdf11
XM_043251543.1 mRNA downstream 33354 1828407 ~ 1850291 (-) True gdf11
XM_043252517.1 mRNA downstream 60897 1802745 ~ 1822748 (-) True timeless
XM_043251571.1 mRNA downstream 85980 1789752 ~ 1797665 (-) True pmela
XM_043252505.1 mRNA downstream 97298 1778309 ~ 1786347 (-) True mmp19
XM_043252491.1 mRNA upstream 493 1889679 ~ 1913851 (-) False abca7
XM_043252490.1 mRNA upstream 493 1889679 ~ 1913851 (-) False abca7
XM_043252487.1 mRNA upstream 493 1889679 ~ 1913851 (-) False abca7
XM_043252488.1 mRNA upstream 493 1889679 ~ 1913851 (-) False abca7
XM_043252489.1 mRNA upstream 493 1889679 ~ 1913851 (-) False abca7
XR_006252158.1 other downstream 6230 1877275 ~ 1877415 (-) True LOC122354708
XR_006252157.1 other downstream 8856 1874649 ~ 1874789 (-) True LOC122354706
XR_006252159.1 other downstream 11340 1872166 ~ 1872305 (-) True LOC122354709
XR_006252143.1 other downstream 13961 1869547 ~ 1869684 (-) True LOC122354692
XR_006252144.1 other downstream 16236 1867270 ~ 1867409 (-) True LOC122354693
unassigned_transcript_1621 other upstream 812022 2701208 ~ 2701279 (-) True trnap-cgg_2
unassigned_transcript_1622 other upstream 812622 2701808 ~ 2701885 (-) True trnaf-gaa_2
unassigned_transcript_1623 other upstream 813610 2702796 ~ 2702867 (-) True trnap-ugg_6
unassigned_transcript_1624 other upstream 814209 2703395 ~ 2703472 (-) True trnaf-gaa_3
unassigned_transcript_1625 other upstream 814373 2703559 ~ 2703632 (-) True trnai-aau_3

Expression Profile