RNA id: XM_043252505.1


Basic Information

Item Value
RNA id XM_043252505.1
length 1437
RNA type mRNA
GC content 0.45
exon number 9
gene id mmp19
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1778309 ~ 1786347 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTAAGTGGGTGCAATATACAATATTTCTGACTGCTGTTCTGCGCGTATGGTCATCTACTGAGACGAGCAGAAAGCGAGAGTTCACAGAGGCGCAGATGTACCTGAGGCAGTTTGGATATCTAGATACTCCCCTGAACCCAGAAGCTCAGAGAGATTCCAGTGAGTGGGCTATGAAAGTGGCTCTCAGTCTTTTTCAGAGGGTGTCAGGGTTGCCTGTCACTGGAAATCTCGACGGAGCTACTCTTCTTAAAATGAGACAGCCACGGTGTGGTGTCGAGGACCCATTTAACCAAAAGTCTTTAAAATTCAGGAGATTTGGTGGATTTTGGCGAAAGAAAAACTTAACGTATCGCATTCACAACTACACACCAGACATGGGGAAAACGGCAACACAGACAGCAATACGCTCAGCATTTAAATACTGGAGTGATGTCACCCCACTCAGCTTTAAGGAGATTAATTATGGACTCGCTGATATTCGAATCTCATTTCACAAGAGAGATGGCTGTCCTTCACCTTTTGATGGTCCTGGCCATGTTCTTGCCCATGCAGAAGCGCCTCCATCAGGAATAGTTCACTTTGATGAAGATGAATTCTGGACTGAAGGAAAGTACTATGGTTCCAATCTGCGTATAGTTGCAGCTCATGAGATCGGCCATGCTCTTGGCTTGGGACACTCTCAGTACAGCAGTGCTCTTATGGCAGCACACTACACTGGTTACCAAGCCAATTTTAGACTGCACATCGATGATATCAGAGGAATCCAAGCAATATATGGTAAAAGGATCTCTAGTACAACCACTGCTGATGATATCTATGCCATGACATATCCCACTACCATGGCACCATTCCCCAGAGGTGATATGCTAGATCCATGCACTGCTAAACTAGATGCTATAATGCTGGGTCCCTCGCATAAGACGTATGCTTTTAGTGGGGATTATGTGTGGACGATAACAGATATGGGTCATAACTCCCTGGTAAAAATAAGTTTGCTATGGAAGGGGCTGCCAGGAAACCTGGATGCAGCTGTATATTCCCCAAGAACCAACAAGACATACTTCTTTAAAGGTGAAAAAGTCTGGAGGTTCACAAATTACCGCCTTGACTATCGATATCCTAAACCTCTAAAAAGAATCCCTGCCAACATTGATGCTGCTTTGTATCATGAGAAGAACAAGAAAATTTTCTTCTTTAAGggctCAGGCTATTGGCAGTGGGATGAAATGGTTTATAATGACCTCAGCATTTATCCCAAACCCATTTCACGTCTGTTTCCTGGCATCCCCTCAAATCCTGATGCAGCTTTCACGTGGACCAATGGGAAGATGTATTTCTTTAAAGGTGACAAGTACTGGCGCATAAATGAGCAGTTAATTGTTGATTCTGGATACCCACTCAGCAAGCGTGTCCGCTGGATGAGGTGCAACTAA

Function

GO: NA

KEGG:

id description
K07998 MMP19, MMP18; matrix metalloproteinase-19 (RASI)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252086.1 lncRNA downstream 37291 1739700 ~ 1741018 (-) True LOC122354127
TU116306 lncRNA downstream 97149 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 97149 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 264406 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 266077 1512005 ~ 1512232 (-) True G78573
TU116534 lncRNA upstream 137358 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 697323 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 697348 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 701137 2487484 ~ 2487836 (-) True G78756
TU116591 lncRNA upstream 910062 2696409 ~ 2696697 (-) True G78769
XM_043251374.1 mRNA downstream 12235 1762575 ~ 1766074 (-) True LOC122353575
XM_043252160.1 mRNA downstream 48470 1725270 ~ 1729839 (-) False inpp1
XM_043252161.1 mRNA downstream 48475 1725270 ~ 1729834 (-) True inpp1
XM_043252411.1 mRNA downstream 62180 1704624 ~ 1716129 (-) False nab2
XM_043252410.1 mRNA downstream 62182 1704624 ~ 1716127 (-) False nab2
XM_043251571.1 mRNA upstream 3405 1789752 ~ 1797665 (-) True pmela
XM_043252517.1 mRNA upstream 16398 1802745 ~ 1822748 (-) True timeless
XM_043251544.1 mRNA upstream 42060 1828407 ~ 1850291 (-) False gdf11
XM_043251543.1 mRNA upstream 42060 1828407 ~ 1850291 (-) True gdf11
XM_043252730.1 mRNA upstream 97298 1883645 ~ 1889186 (-) True r3hdm4
XR_006252099.1 other downstream 62180 1704624 ~ 1716129 (-) True nab2
TU116011 other downstream 555843 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 613968 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 614655 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 614875 1163363 ~ 1163434 (-) True trnac-gca_117
XR_006252142.1 other upstream 76340 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 78660 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 80923 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 83200 1869547 ~ 1869684 (-) True LOC122354692
XR_006252159.1 other upstream 85819 1872166 ~ 1872305 (-) True LOC122354709

Expression Profile