RNA id: XR_006252099.1


Basic Information

Item Value
RNA id XR_006252099.1
length 3127
RNA type transcript
GC content 0.52
exon number 8
gene id nab2
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1704624 ~ 1716129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacagagcgcttTAAACGAGCAGCAGCCACTCAGCGTCTGAGGCGCCGGGGAATCCCGCTGCTCGCGCCGCGTCACCGAGCCCGATCACCGCCCACAGACCCGGTGATCTCCGGCGCTCTTCCACGCGAACGCCGACTTCACTCCCGTCCGTCCGTGCACCGAATCCGCCACGCTGTTCAGCATCTAAACGGCCGGCTTTCCCCCCCGTGCAGACCCTGAGCTCAAACGGTGACAGAATTCCCCGTCCCTCCACGCCCCTCCGCGAGCGGCGCTTCCCCCCGCGCTCAGACCGGAGAGGAAGGCTCTTATTCGGTCAGATGGCGTGCCGCAGTCCGCCCACGCGTTTCTCGCGCCCACACGGGCAGCGAAAGGAGCGTCATTAACTCACCGCCACTGCCAGCGCAGCAGAAGCACAGAGTTTCAAGAACATTTCAGTCCAGGCGCACATCTGTAGAACAAGGTCTAACAAGCacagagaacaaaaataaaccgGGCGTCGGAGGCGCAGAGACACGGGGGTTTTTAACAGAAGGGAAAGTTTGACTCGGTCGCCGGGAGCTCAAGCGGTCTGCCGGATCCCGTCCTGGATTCTGTCCTGAAACCTCTCGAGCCGCGCATCGGGATGTCTCTTCCGCGGACGCTGGGCGAGCTCCAGCTCTACCGAGTTTTACAAAGGGCCAACCTGCTGATGTACTACGACACCTTCATCCAGCAGGGCGGCGATGACGTCCAGCAGCTGTGCGAGGCGGGCGAAGACGAGTTCCTGGAGATCATGGCCCTGGTCGGCATGGCCACCAAACCCCTGCATGTGCGGCGTCTGCAGAAGGCTCTGCGCGACTGGGCCGCAAACCCGGCGCTGTTCAACCAGCCTCTGGCCGCCAACGTGGCCCCTTGTGGGATCCCTCTCCTTCGGATCGACTCCGCAGGCTCGGGGGGCGCTGGGGGCAGAAAGTGTTTAAGCAACGGTCAGCCGGGCTCTCcgggagaaagagaggaagtggGATCTTGCCTCACGCCGCTCAGGGATAACAGTCCGAAGAGCCCGTGCTCGCAGGCTTCTCCTGTACCTCCTGACCATCTGTACCGAGAAAAACTGTCCCCCATGGACCCCCACTGGCTCAGTCCGGAGATGTACGGAGCCGTCGAGTTAGATGAAGATCAGCCCATTACCCCTCTGCCTTTCGCTTGCCACTCGCGTCTCCTCGGTCCTCCGACGCCGACGTCTTCTTCGTCCTCCTCCACTATGACCTCTCCGTGGCCCGGGGGTCAGCTGGACCCGGAGACCATCAAAGCCGTGGAGGAGAGCGTCGATAGGCTGCTGAGAACCATGCCGCAAGCTGACCAAACCGAGGTGAAGACGCTTTTGAGGCTCAataagaaaatggccaagacggTGGGACACATTTTCAACCTGGAGCCTCAGGACAGGAGCAAAGAGGAAGAGATTCGCAAGTACAGCCTGATCTACGGCCGCTTTGACTCCAAGAGGAGGGAAGGGAAACAGCTCACCCATCATGAGATGCTCATCAACGAGGCGGCGGCTCAGTTCTGCATCCGTGACAACGCTCTGTTGTTACGTAGAGTCGAACTCTTCTCTTTAGCGCGGCAAGTGGCGAGAGAATGTGCCTACACGTCAACGTTTAAACATAACAGGACATACTCAGATGATTGCACTGCCTCTGTTGACTGTTCTGCTCAGAAGAGACTCAAGCTTGATGTCACAGATTCTGACAGACTGTGTAAGGATCCAGTAATCAACAGTGACAACAGATCTACAGCGGATGACAACAGCCTCTCTGGAGAAAGTCTGGATAGTTTAACACAAGATATCAGCCCTCAGTTGCACCCCTCCTCATCCCCTCACCCCCTCACCGACACTGCTGGCCTCATCAACTGGAGCCGCCAGCTCATGCAGCAAACGCTCATGGATGAGGGCCTCAGATTGGCTAGAATGGTGTCACGTGACAACGCGAGCAAAGTCAGCCTAGGGTCAGAAAAGAGACAAATTTCAGTGGAACAGTTCTCCTTCGAGCCATCCGGTATGCAGAGGAACGTTTCTTTATAGGAACACGGCGTtggatcctttgcagtgaatgggtgccgccaggagtccaaacagctgataaaaacatgacaataatcTACTCTACACTGCAGTCCAATCCATCGGTAATGGgttgtgaagtgaaaagttcAAACAAATCCCTTGTTAGGACGTTTCGACTTTAAACATCTCCTCCTGGTTAAAATGGGAGTCCATAATCCAGATGGAGGAGAAGGTGTCAGAGAGGAGAGGATCAAGTAACAGAAGCAGCAGTCCAGCAAACACCAAAGACGATCCGTAACTGACATTCTGGAAGTCTCCATGTTGAACTCAGGTTGGATGTCATGTCTAAATGCAGCCGCGGTGTTCGGTTCGCTATGGTCTGTGAAGCTTTGAAGACTTGTCTGCACCTTGCCGTGTTCTTTTAGAGCATTTAAGGGCGTTTGTGGAAAGTTATTGTATCTTTGCGAACGAAATTTGAAGCAACGTCGTGTTACAAATACATTCCGTGTTCTCTGTCGGGTTAAAATGTCAGTGAAAAGCTTCAATGGTGCTAATTTTGTGTCGAGCTAATTCTAGAACGAATCTGTGTTACCTAAACCTTAATTTATTCGGTCAGATGACCTGCTTCTCGTTCTAAGCGGAGCTGGGAGACTTTGGGTTTACTTTTCATTCCATTTTCTCAGTTTCTTGTTTAGATGGAGTTCTAAGAAAGGTTTGGGAGGAACGTGTTTATTTAATCCACTTTATTATGTACAGCGAGCGAAATACGTTTACAGGTTTTGGATTATATTAACATGTGAAATCCTGAAATCGACTATATTAAGAAACCCTTACACTAGCAACGCACCGATGCAGTAAACATGAATACAGCAACTCTAAAATGCACAGATGAGTTTTCTTGggttacaaaatgtaaatgattcaaatgattcaaacgAATCGAATGAACGTTTCAAGGTTGAATGGCTAATGAGAACAGCATTACAGCGCTCATGTTAAAAATAGATCTGTGGCCTCTTTAAtgacagattatttattttttaatttctcaataaattatattgtattgtttctCTA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116306 lncRNA downstream 23464 1588704 ~ 1681160 (-) False LOC122354408
TU116313 lncRNA downstream 23464 1593234 ~ 1681160 (-) False LOC122354408
TU116271 lncRNA downstream 190721 1512836 ~ 1513903 (-) True G78574
TU116270 lncRNA downstream 192392 1512005 ~ 1512232 (-) True G78573
TU116269 lncRNA downstream 193098 1510981 ~ 1511526 (-) True G78572
XR_006252086.1 lncRNA upstream 23571 1739700 ~ 1741018 (-) True LOC122354127
TU116534 lncRNA upstream 207576 1923705 ~ 1924282 (-) True G78726
TU116575 lncRNA upstream 767541 2483670 ~ 2484844 (-) False LOC122354525
XR_006252118.1 lncRNA upstream 767566 2483695 ~ 2484928 (-) True LOC122354525
TU116576 lncRNA upstream 771355 2487484 ~ 2487836 (-) True G78756
XM_043252414.1 mRNA downstream 4166 1697584 ~ 1700458 (-) True cnpy2
XM_043252413.1 mRNA downstream 4902 1697584 ~ 1699722 (-) False cnpy2
XM_043252581.1 mRNA downstream 7837 1680230 ~ 1696787 (-) True LOC122354408
XM_043252572.1 mRNA downstream 26429 1664162 ~ 1678195 (-) False dgkab
XM_043252577.1 mRNA downstream 26429 1665623 ~ 1678195 (-) False dgkab
XM_043252160.1 mRNA upstream 9141 1725270 ~ 1729839 (-) False inpp1
XM_043252161.1 mRNA upstream 9141 1725270 ~ 1729834 (-) True inpp1
XM_043251374.1 mRNA upstream 46446 1762575 ~ 1766074 (-) True LOC122353575
XM_043252505.1 mRNA upstream 62180 1778309 ~ 1786347 (-) True mmp19
XM_043251571.1 mRNA upstream 73623 1789752 ~ 1797665 (-) True pmela
TU116011 other downstream 482158 1217451 ~ 1222466 (-) False phactr3b
unassigned_transcript_1591 other downstream 540283 1164270 ~ 1164341 (-) True trnac-gca_119
unassigned_transcript_1590 other downstream 540970 1163583 ~ 1163654 (-) True trnac-gca_118
unassigned_transcript_1589 other downstream 541190 1163363 ~ 1163434 (-) True trnac-gca_117
unassigned_transcript_1588 other downstream 541619 1162934 ~ 1163005 (-) True trnac-gca_116
XR_006252142.1 other upstream 146558 1862687 ~ 1862826 (-) True LOC122354691
XR_006252152.1 other upstream 148878 1865007 ~ 1865147 (-) True LOC122354701
XR_006252144.1 other upstream 151141 1867270 ~ 1867409 (-) True LOC122354693
XR_006252143.1 other upstream 153418 1869547 ~ 1869684 (-) True LOC122354692
XR_006252159.1 other upstream 156037 1872166 ~ 1872305 (-) True LOC122354709

Expression Profile