RNA id: XM_007235858.2


Basic Information

Item Value
RNA id XM_007235858.2
length 3263
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC103024581
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 22512903 ~ 22559382 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATACGGAAGCGTGAGAGAGCTGCTTGTGCTTTACTTCACAGCGCATCTCCATCCAGCAGCTCAGCGCCCACCACAGACATGCAGCCCACCTGCACCTCCTGACCTCTTCCTGACCTGAAACCTTTCCTCAACAAATGACCCAAAGCCAGGAAACCAAACCATCACcataaccagcagcagcagcagcaacagccaGCATGAGTTCCCCTGACAGCCCTGAGCGCCTCACCCCCAGTGATGTGAGCCACGTCCTGCTGGAGTTTCTCATGTACATGGGCAAGGCCATCCTGCTGCTGTACCCCGTCTACCTGACGGGCTCCCTGGGCCTGAGCATTAGCTGGGTTCTGCTGAGCCTCCTGGTCTGGAACATGTGGGAGAAGAACCGCAAGCACAAGGATGTGAGGATAGACACAGCCATAGACTTCTTGGAGAACGAGTTCAATGTGATCAAGGGTGAAATGAAGACCCTCAACAGCCCTGCCTGGATTCAGTTTGCTGATGTTGAGAAGGTTGCCTGGATCAACAAGATTCTTCATCAGGCCTGGCCGTTCTTTGGCGTCTTCATGGACAAACTTCTCAAGGAGAGCATTCAGAAGTCCCTTCAGGAATCCAGCCCTCACTTCAAAACCTTCAAATTCACCAAGGTCCACTTCGGACAGAGGGCTCCAACAATTACAGGAATACGAGTGTACACACATGAAGTAGACAAACGGGAAGTCATCCTGGACCTAAACATTGTTTACACGGGGGATATGACCATTAATGCAGATGTGAAGTCGCTTGCAGTTGGACTCAAGGAACTTCAGCTTCAGGGGATGCTCCGCGTCATCCTCGACCCTCTGATTGGCCAAGCCCCGCTTGTGGGTGGGGTCACCATGTTTTTTATCCGCCGCCCTAACTTGCATGTAAATTGGACTGGGGTGACCAATCTTCTGGACAATCCTGCATTCCGTAACTTTTCAGAAACGGCCATCTTGGACGTCATCGCATCCATCATGGTCCTGCCGAACCGCCTCTGTTtcccactggtagaccaagtcaACATGGACCAAATGAGGTTCCCTCTGCCCAGAGGCGTGGTGCGTGTTCATGTAGTGGAGGCTCAGGATCTGGTTGCTATGGATACGGTGATGATGGGTCTGGTGAAGGGTAAGTCGGATCCATATGCAGTTCTGAGGGTTGGCAATAAACGCGTCCAAACGAAGACCATCAAGGAGACCCTGAACCCTCGCTGGAATGAAGTGTATGAGTTTGTGGTTCATGAAGCTCCTGGTCAAGACCTTGAAGTGGAGCTTTTTGATCAGGACACAGACAAGGATGACTTTCTGGGCAGGTTCAATCTGGATTTGGGGGAGGtgaagaaggagaaagaaattGATAAGTGGTTCAGCCTGCAGGACATTCAGAGTGGAAAGATCCATCATGAAAGCCTGCAGTGGTTGTCTCTGCAGACGGATAAGAATCTACTGAAAGAGGCCACTGATGGCTGTTGCTTTGTTTTGCCATCCATGCTTGCTATACGCCTGGACAGCGCCTCTGCACTGCCTAAAGACCAGAGTGAATTCAGCCAGCCTGATAAACCCACGAAGCATGCAAAAGATTCAAAGCTCACAAGAAGACAAACCAACCCCAGCTCCTATGTAAAGTTCTCCATAGACCAGCAGAGCCAGAAAAGCAAGATTGTGTACAACTCCAGAGATCCTGTGTTCGAGGAGTGTTTCACATTCTTTGTGCATAATGTGGAAAGCCAAGTGCTTAACATTCAGGTGATGGTGCCTGAGAAGAAAACCTCTCTGGGCGTGCTCACTCTGCCTCTCAGCCGGCTCCTCAATGCTTCTGACTTCACTCTGGACCAGCGATTCCAGCTGGAGCGATCTGGAGCCAACAGCCATCTGAAGATGAAAGCTATTCTCAGGGTCCTGAAGCTGGAGAAGCCTAAGCCAAAAGTAGAGAATCCTCCAGCAGCCAATCTGCAAAAGGGACTCAATAACAAACCCCAGCAAGTCCAACCAAAGCCCACCCAACAGCAGCCCCAACCTCAGCCTCCAGTTCAGTCCTCCCAGCCTGTGCAGAAGGTGCCAGCCTCCACACCGCCCCAGGATCCTGCAGCTACCATGGACGGCCCAGTCTTGAACAGCTCCTCAAGTGTGCAACAGACAGCGTACATCCCTCACTCCCGAAGAGGCTCCTTCCTGGCTACGGATGGACGACGCTCCAGACCCACCACTCCATCCCGCATTCGCCGTTACGACTCTCACAGCCTTCTGTCTGAGAACTCCATTGCTTCTTCCCGCTTGGACCTTGCCGACAGCACCCCATACCCAGAAGCCCTTTTAAATCATCAAGGAAGCTATGGCCAGATCCAGCTGACTATTCGTTATGCCACTCTGAGGAGCAAGCTTATTGTGACAGTCAACGGCTGCAGGAACCTGTTCCAGTGCAATGACAGTGGTTCGGATACCTATGTTCGCATTTACCTTCTACCAGACCAGACATGGAAGCACCGCATGCGCACACAAGTGAAGAGGAGGACTGTGGAACCTGTGTTTGAAGAGAAGTTTGAGTTTTCTGTGCCATTGGAAGATGCCAAGTGCAGGATGCTGGATGTTTCTGTGAAGAACAATCGAATGTTCACCACCAGAGAACGGAAAGAGATCGGGATGGTGCTGATTGATCTGTCtaagacagatattgtgaaaGGTTCCATTGAATGGTATGAACTCTCTCTCCCTGGActaaagaaaaatgaagcttaACCTTCCACATGATCAGACTGTTACAGATTCTCCATATTCTACAGCTGTGTTTACAAATTCAGTGCACaactactttttttgtttgattatatagatttaatatttttactttatttattatagggATGGAGGTTTACTTAGCTATTTGTTATTTTGCACTTTCttctgaattaattttttttttttcagactagTAACActgtattatattgtaaatgtcaaataaaaaccATGTATCTTTACAAAGAAGGCAAAATTGAGCTTATGTAAATTAAGATTCAAAttattttcattggacagcaaaaatatttttatgggcACATGGCAGGTTTGTACTTTTTGGTGAGGATTTTCATGTATGTAATGTTATTTTCTATGTGGTTTATTTTGCACTGTATAGAACTAAATTTGCACctcttaagtgtgtgtgtgtaaatctaTAAAATAAGGATGTCTTTGAATGATCATGGATCAGCCAAAGCGtttaataaaagcataaaatgaAA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229461 lncRNA downstream 5469 22505329 ~ 22507434 (-) True G169440
XR_002651377.1 lncRNA downstream 232254 22276323 ~ 22280649 (-) True LOC111194929
TU229417 lncRNA downstream 270212 22236616 ~ 22242691 (-) True G169409
TU229415 lncRNA downstream 326336 22186283 ~ 22186567 (-) True G169407
TU229367 lncRNA downstream 381106 22131550 ~ 22131797 (-) True G169371
TU229493 lncRNA upstream 14580 22573962 ~ 22576789 (-) True G169470
TU229510 lncRNA upstream 113754 22673136 ~ 22673467 (-) True G169487
TU229552 lncRNA upstream 179816 22739198 ~ 22746506 (-) True G169521
TU229555 lncRNA upstream 184366 22743748 ~ 22745035 (-) False G169522
TU229556 lncRNA upstream 184366 22743748 ~ 22748353 (-) True G169522
XM_022680666.1 mRNA downstream 36631 22338439 ~ 22476272 (-) True man1a2
XM_007255609.2 mRNA downstream 192882 22315797 ~ 22320021 (-) True fam46c
XM_022680455.1 mRNA downstream 280899 22207557 ~ 22232004 (-) True wdr3
XM_022680452.1 mRNA downstream 627229 21870790 ~ 21885674 (-) False hao2
XM_007255605.3 mRNA downstream 627231 21870790 ~ 21885672 (-) True hao2
XM_022680461.1 mRNA upstream 535848 23095230 ~ 23566845 (-) True LOC103024947
XM_022680464.1 mRNA upstream 681958 23241340 ~ 23300036 (-) True LOC111194931
XM_022680463.1 mRNA upstream 754334 23313716 ~ 23465516 (-) True LOC103024627
XM_022680465.1 mRNA upstream 1551351 24110733 ~ 24198957 (-) True arhgap15
XM_022680467.1 mRNA upstream 2917545 25476927 ~ 25489657 (-) True LOC111188175
TU229422 other downstream 154496 22338439 ~ 22358407 (-) False man1a2
TU229253 other downstream 689865 21822713 ~ 21823038 (-) True G169286
TU229165 other downstream 846780 21650569 ~ 21666123 (-) False cryl1
TU229088 other downstream 939493 21565128 ~ 21573410 (-) True G169171
TU229090 other downstream 941231 21565128 ~ 21571672 (-) False G169171
TU229637 other upstream 335386 22894768 ~ 22895432 (-) True G169567
TU230159 other upstream 1753201 24312583 ~ 24324505 (-) True G169980
TU230256 other upstream 2942753 25502135 ~ 25509416 (-) False LOC111194864
TU230416 other upstream 3337213 25896595 ~ 25905482 (-) False LOC103030841
TU230949 other upstream 5341412 27900794 ~ 27902899 (-) False LOC111194963

Expression Profile