RNA id: AMCG00021399


Basic Information

Item Value
RNA id AMCG00021399
length 2462
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00021399
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16550033 ~ 16555645 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTCTGCCAAGACAGCTATTGCCTGTTATATTGGAGTGACTCTTTTTCTTCGTATGACCAGTATATCATTTGAAcacaattaatttcattttcaaatagtcTGAATGTACAtcttaacaaagaaaacacgACCCCACCGGCAATGTCTCGGTCACCCTATTGCAGCAACGGGGTCCTTATGGTGGCCATGGCGCAAAAATGGCGCTGAAGCTGATTGTGTTGTCGTGCTTTTGAGAGTATAGTACCGGGTACCGCagagttttattaaatattatatatacctACAGTAAAGTATTATCGCTCTCTATAATCCATACCTCCGCAGGCTGTCAGACTGTGTGTTTGGTTGACCGGGAACGAGTGTGTGTGCCGTGATGAGTGGGTTTAACTTTGGTTCCGCTGCCTCTGGGGGGTTCAGCTTCGGGACTCCCAAGACCACAGCGGGAGTCGCGCCGGCAAACGCCTTCGGGGCCCCTGCTGTGGGCGGGGGGTTCGCGTTCGGGACCCCGGCCCAGCCTCAGCCTCAGCCTCAGGCCCAGCCCCCAGCCGCCACAAGCCTCTTCTCTATGCCAGCGCAGGGCAATGCTGCCACACAAGGGGGGTTCAGCTTCGGCACCCCAGCGCAGACCAGCGCCACAGGGACTGGCTTTGCCTTCAGTAACTCCACCCCGAAGCTCAGCCTGAATATGCCGACCACCTCCCAGCCTTCTGCCACAGGGGGGCTGTCCATGGGTGGTGGGTTGGCACCCTCCACAGGGTCTGGGTTCGCAATGGGGGGGGCCCTGACCACACAGAGCACCATGGCGCCCTCCAGTGGGGGGTTCAGCTTCGGGATGGGCACAGGGGGTCTGGGGGGAGCGACTCTGCAAGCTCAGGCTCAGGCTCAGCTTCAGCCCCAGGTCCAGGTTCAGCCCCAGGTCCAGGCTCAGGCTCAGGCTCAGGCTCAGTCTCAGCCTCAGCCTCAGACCCAAGCAATGGGGGGGTTCTCCCTGGGGGGGGGCACCGCCACCACAGCTACCTCCCAGCCCACGGGGGGCTTTAGTTTTGGAGCGGCAAAGATGCCTGCAACAGCGGCAATGCCTGTCTCCGCCCCTGCCACCTCCAGCACCGGCGCTACCATGGGAGGCGGGTTCTCATTTGGGAACAGCGCTGCTATGGCAACCAGCCAGCCCACTGCTACCCCCACACTCTCCCTGGGGGGACAGACTACAGGCCTCACTCTGGGCTCCATGACTGCAGCCTCCACAGCGTCAGTGGCCCCTGGAATCACCAGCCAGGGAACCGGCTTCTCCTTTGGGGCCAAACCCACAGCTGCCCCGGCTGCAGCCACCACAACCCCTGCTCCCCAGGCTGTCACAGCGACAGGCTCCTCCCTCTTTTCTGCTCCACCCGCAGCCTCCTCCGCAGCCAACGCCTTTAACTtgggGTCAGTTGCCACCACCCCGGCCATGACCTCTGTGGGTGGAGGGCTGGGTTTCATGCTTAAGCCTCTGGGTGCTACATCGACACCCAGCACTGCTGCCACTGtgaccTCCTCCAGTGCGGCCACTGTGTTCTCTCTGGGCCTGAAGTCAGCGGGGGCCCCGGCTGTGGGCACCATGGCGTCCAGCACCGCTACCATCACTGCCACCACCGCCACAACCGCCAGTGCCCCCCCAGTGATGTCATACACTCAGCTGGAGGCTCTGATCAACAAGTGGAGTCTGGAGCTGGAGGATCAGGAGCGGCACTTCCTGCAGCAGGCCACACAAGTCAACGCCTGGGACCGTGTGCTCATTGAGAACGGAGAGAAGATCACGTGTCTGCACAGGGAGGTGGAGAAGGTGAAGCTGGATCAGAGGAGGCTGGACCAGGAGCTGGATTTCATACTGTCCCAGCAGAAGGAGCTGGAGGACCTGCTGTCACCGCTGGAAGAGTCGGTGAAGGAGCAGAATGGCACCATCTATATGCAGAACGCAGACGAGGAACGAGAGAGGACGTACAAGCTGGCGGAGAACGTGGACGCCCAGCTGAAGCGCATGTCCCAGGACCTGAAGGAGATCATCGAGCATCTCAACACCTCCAGCGGCCCGGCCGACACCAGCGACCCGCTTCAGCAAATCTGCAAAATCCTGAACGCACACATGGACTCCCTGCAGTGGATCGATCAAAACTCCGTCCTGTTGCAGAGGAGGGTGGAGGAGGTGTCCAAGCTCTGCGACAGTCGGCGCAAGGAGCAGGAGAAGAGCTTCCGGATCACCTTCGATTGAGCAGTACTAATACGACAacacagcaaaatatatatatattaactataACATCTGTTTGAATGCAGACTTCTCCTATCTTGTAAAACCATATATAAAAGAGTTTTTCTGTTGAATGTGAATGAAGTGAAACCTGATGTTTTTTtcggaggggtggggggggtccaTTGGGTATTTGGTAAAGGGGGCCGTTTTGTTACAAATAAAGACTGGAT

Function

GO:

id name namespace
GO:0005643 nuclear pore cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
K14306 NUP62, NSP1; nuclear pore complex protein Nup62

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107030 lncRNA upstream 688 16547657 ~ 16549345 (+) True G85746
TU106936 lncRNA upstream 257840 16289749 ~ 16292193 (+) True G85674
TU106874 lncRNA upstream 380147 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 627312 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 794601 15753082 ~ 15755432 (+) True G85507
TU107041 lncRNA downstream 13802 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 16548 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 28672 16584317 ~ 16584765 (+) True G85760
TU107047 lncRNA downstream 30672 16586317 ~ 16589411 (+) True G85763
TU107051 lncRNA downstream 40556 16596201 ~ 16596902 (+) True G85766
AMCG00021400 mRNA upstream 4534 16541957 ~ 16545499 (+) True AMCG00021400
AMCG00021402 mRNA upstream 14217 16531948 ~ 16535816 (+) True AMCG00021402
AMCG00021398 mRNA upstream 22838 16526063 ~ 16527195 (+) True AMCG00021398
AMCG00021405 mRNA upstream 29670 16518570 ~ 16520363 (+) True AMCG00021405
AMCG00021397 mRNA upstream 50388 16474783 ~ 16499645 (+) True AMCG00021397
AMCG00021401 mRNA downstream 953 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021403 mRNA downstream 18283 16573928 ~ 16579544 (+) True AMCG00021403
AMCG00021407 mRNA downstream 80710 16636355 ~ 16642487 (+) True AMCG00021407
AMCG00021408 mRNA downstream 97795 16653440 ~ 16655886 (+) True AMCG00021408
AMCG00021415 mRNA downstream 199288 16754933 ~ 16756372 (+) True AMCG00021415
TU106850 other upstream 476415 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4449326 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5562859 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7126614 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7916623 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 34536 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 100999 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 100999 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 442232 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1692845 18248490 ~ 18249686 (+) True G86121

Expression Profile