RNA id: AMCG00021398



Basic Information


Item Value
RNA id AMCG00021398
length 783
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00021398
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16526063 ~ 16527195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCGTGCGCCCGGGTATCTGTGTGACAGCAtgtccctgccccccccctcccgcAGCGTTCCTAGAGGAGAAGGATGCTCACTCTCTCCTCAGGCGGCTGCGGCGAGCGAACGGCTTCCTGGAGGAGCTGCGACAGGGCAACATCGAGCGCGAGTGTGTCGAGGAGAGCTGCAGCTTCGAGGAGGCCAAGGAGGTGTTCGAGAACAAGGAGCGCACGATGGAGTTCTGGAAGAATTACATCTACACGAGCGGCAGTAACACGGAGGCACGGGAGGGCGAGCGGGCCGAGGCCGTGTACATGGTGGTGCCACTACTGGGCGTGGCGCTGCTCATCGTCATCGCGCTCTTCATCATCTGGAGGTGCCAGCTGCAGAAGGCCACGCGGCGCCGGCCCACCTACTCCCAGAACCGGTACCTTGCCAGCCGGACCTCCCGCAGCCTGCCCCGCATCCTGGTGCACAGGGACCCCCCCCACGCCGTCTCCTCCACGGATGCCGGCCCGCCTGATCCCTGCGCCCgcggcggaggaggaggaggaggcggttGTCTGACAGTGGGGTCTGATGCCGGCTCCTGCCCCAACCCTGGCCCCCATGCCCTCCCCGGCCACAGCCTGTACGTCCAGGACTCTTCGGCCTCCATGGCCTCGCGCCTGTCCAGCGCCACGCCCCCGCCGTCCTATGAGGAGGTGACCGGACATGTGGAGAGCAGCAGCGACGAGAACACCGTCCCCTACAGCGACCCCCCTCCCAAGTATGACGAGATCGTCAAGCAGAAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106936 lncRNA upstream 233870 16289749 ~ 16292193 (+) True G85674
TU106874 lncRNA upstream 356177 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 603342 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 770631 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 949545 15575549 ~ 15576518 (+) True G85497
TU107030 lncRNA downstream 20462 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 42252 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 44998 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 57122 16584317 ~ 16584765 (+) True G85760
TU107047 lncRNA downstream 59122 16586317 ~ 16589411 (+) True G85763
AMCG00021405 mRNA upstream 5700 16518570 ~ 16520363 (+) True AMCG00021405
AMCG00021397 mRNA upstream 26418 16474783 ~ 16499645 (+) True AMCG00021397
AMCG00021394 mRNA upstream 54207 16466707 ~ 16471856 (+) True AMCG00021394
AMCG00021395 mRNA upstream 91987 16418223 ~ 16434076 (+) True AMCG00021395
AMCG00021389 mRNA upstream 236455 16288754 ~ 16289608 (+) True AMCG00021389
AMCG00021402 mRNA downstream 4753 16531948 ~ 16535816 (+) True AMCG00021402
AMCG00021400 mRNA downstream 14762 16541957 ~ 16545499 (+) True AMCG00021400
AMCG00021399 mRNA downstream 22838 16550033 ~ 16555645 (+) True AMCG00021399
AMCG00021401 mRNA downstream 29403 16556598 ~ 16561776 (+) True AMCG00021401
AMCG00021403 mRNA downstream 46733 16573928 ~ 16579544 (+) True AMCG00021403
TU106850 other upstream 452445 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4425356 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5538889 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7102644 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7892653 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 62986 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 129449 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 129449 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 470682 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1721295 18248490 ~ 18249686 (+) True G86121

Expression Profile