RNA id: AMCG00021394


Basic Information

Item Value
RNA id AMCG00021394
length 2655
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00021394
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16466707 ~ 16471856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCGATGCAGCCTGAAACTACAAATCCCAGCATCCTCCAGCGCCAGACACGATATTCCCATGCTGCTTTGCGTTGAGCCGCAGGAAATCGTCTTGTTTCGGAAGCAGAGTGTCAGCCATGCGCCGAGTCAGCCGGCGGCCCTGTGAGGATGCTCCCGCCCCGGAGGAGCAGGAGACGGAGGGACAGCGGCAGCTACACAGCCTCCTGCTGCAGCAGCTCGACACCGACACCGACATCGAGCGATGTTTGGCCAAGAAGAAATGCTTTGGCCCGGCGGCCCTGTACCTGCCTTTTGGGGAGCAGGCTGCCGGAGTGCGCAGTCTGTCCCAGTTCCGGGCCCTGCAGGAGGGGGAGCAGGAGGTGGCGAGCCTGCGGGAGCTGGGCCTCTCCGACACTGAGATCCAGCTCTGGAGGCACAGGAATGTGCCAGAGGCTGGGGAGAAGCCTCGGGGAGTGTGGGCGGCCCCGGGCGTGATGGAGCAGCGAATGCGTGAGCTGGAAGAGAAGGTGGCATGGCGGAGAGCCCTGCTCTTGCGGCCCCAGCGCTTCTCTGCCAGTCGCCCACTGAGCCGCCGGCAGATGGAGATCGAGAAGGCGCTGTTCCGCGGCTCTGACCGCCACTGTTTCCTGTCCGCGCTTTACCACCAGGGTGAGAGAGTGCGACCTGACGTCTTGAGTCAGGGGGGGCCAGAGACACCTTCCATCCCTGCAGATGCCGAGGGGTCGGACTCATCCCAGCCCAGCCAATCACAGAATTTGAGCAAACACTCCAGTGAATCACAGGGTgggagcagcagcagtagcagctaCAACCAATCAAACATCGACCTTAAAAGctccagccaatcacagagtgGGAGCAGGAATCCCAGCCAAACACAGATAGAGAGCCGAAATTTTGACCAATCAAAAAGCCACTCTGTCCAATCACAGAATGAGACTAGCAGCATCTTCAGCCAATCACAGGACAAGAGCAACATTATCCACCAATCACAGTCCCAGAGCAGGGAAACCAGTGCAGGATTATCTGTCCCCCAGAGCCTCAGTGCAAGCCAGCCAATTGGCAGGCTTTGTAGCATAGGGACGGGACCCCCATTAACAGTGACTGGACCAgtgcagccaatcacagagcacgAGATCCGGGGCAACAGGGCGACTGTGCAGGAGATCCGCCAGATCCCGCGATTCCAGAACTACCAGCAGGGGGAGCCCTCCAAGgTGCTGTTCGTGAGAAACCTCAGCCCCCGAGCCACCCTGGCCCAGCTGGTGTCAGTGTTCTCACTGTTCCAGCCTCCCACCACCCCACCTCTGCTGTACCGTCTGCTGACTGGCAGGCTCAAGGGCCAGGCCTTCATCACCTTCCCAGACAGGGCAACTGCGGCGGACGCCCTGGAACTGGTGAACGGATTCCGGTTGACGGGGAGGCCTCTGGTCATCGAGtttgggagggagagagaaagcgggagggaaggagagaggcgCAGAGAGCACGGAGCAGCCCCGACCACGTCATGCACAGGGACTGAGGCACCCAGCCAGAGGGagacggacggacagacagacagatggggaTAGTGCTGAGATTGACTGACGgtcagagagagcgagagagaaccATGCCCTCCTGGGATGCAGAGAAAGACACAGATTGTGAAGAAGTGGGGGTGGGAAGCAGCAGCCTGCTATCTTTCCAGGAACGCAGGACTGATACATTGACAAAAGAGAGAATCAGATCCACCTCACATTTACTGTGctggaaatgagagagagataggagaGGGTTGGGAGAAGCCCTGATACATTCCCACTGAAGCGTGGGctgaggaaagaaaaacagaaagagaggaggggggacacCCCTAACCTTCTGCTGtcttaaaaacaggaaacaggaaagagagaaacagacgACGCCATTCTCCCCTCTCCTGCACTCAAAAGTGAGGAATTGACTTCTATACAGAGGATTTGTTTATGTCTTTGAAATTGTAGAGGtgacaaaacaaatccatctGAATGGATACAATGATTTTTGTGTGGTGTTCGAATTTGTACTTAAGATTTTTGgattgaaataaagaaatgtgtttctatagatatagacacacacatgtCCTTAGtatagttcaattaaaaaatatttgtaatatatatataattaagaaaaataaaagttcaacCTCACAGAATTCTACACTCTTCTAAGCATGTCCTAAGTTAATAGACTGACAGGGATGAAAAAAAGTGGAATGTAATGACTGATTCACCACATGGGTGCGCTGTGCACCATCAAAATTGGGGAGCTTGGTCTGCTGAGCATCCAGGAGAGGGCCAAATGCAGGCTAAACGCTGGCAGTGCTGCGCAGACAACACTTTGACAGTGGTGGGAGCCCTTGACCAGGAGGGGCCGTAGTGTCTCCTGCTTTTTGTCTCAACTCGTAATCGTAATCACATAATTGAACGATTGAGGATTGTTTCAATCGGTGTGAACAGAGCAGCGGTGCAATGGTGTAGGGAGAGACATACAGAGCCTGCAGGACtgactgtggccccccaggTCCAGGACCCCCCCTCACTGGCATGAAAGATGGTAATCATGTATTGCTCTTTACAGCTGTGTGTGCTGGGGGTTGCTTctcattacagtacagtgc

Function

GO:

id name namespace
GO:0044446 obsolete intracellular organelle part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106936 lncRNA upstream 174514 16289749 ~ 16292193 (+) True G85674
TU106874 lncRNA upstream 296821 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 543986 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 711275 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 890189 15575549 ~ 15576518 (+) True G85497
TU107030 lncRNA downstream 75801 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 97591 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 100337 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 112461 16584317 ~ 16584765 (+) True G85760
TU107047 lncRNA downstream 114461 16586317 ~ 16589411 (+) True G85763
AMCG00021395 mRNA upstream 32631 16418223 ~ 16434076 (+) True AMCG00021395
AMCG00021389 mRNA upstream 177099 16288754 ~ 16289608 (+) True AMCG00021389
AMCG00021386 mRNA upstream 195835 16256465 ~ 16270872 (+) True AMCG00021386
AMCG00021385 mRNA upstream 233897 16222904 ~ 16232810 (+) True AMCG00021385
AMCG00021391 mRNA upstream 264336 16199945 ~ 16202371 (+) True AMCG00021391
AMCG00021397 mRNA downstream 2927 16474783 ~ 16499645 (+) True AMCG00021397
AMCG00021405 mRNA downstream 46714 16518570 ~ 16520363 (+) True AMCG00021405
AMCG00021398 mRNA downstream 54207 16526063 ~ 16527195 (+) True AMCG00021398
AMCG00021402 mRNA downstream 60092 16531948 ~ 16535816 (+) True AMCG00021402
AMCG00021400 mRNA downstream 70101 16541957 ~ 16545499 (+) True AMCG00021400
TU106850 other upstream 393089 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4366000 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5479533 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 7043288 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7833297 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 118325 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 184788 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 184788 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 526021 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 1776634 18248490 ~ 18249686 (+) True G86121

Expression Profile