Fish Single-cell RNA Database

CELL TYPE: Ectoderm cells

Distribution of Ectoderm cells in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000079391	mrpl42	4: 1821637 ~ 1824836 (-)
ENSDARG00000045847	si:ch211-214j24.10	4: 5317483 ~ 5325336 (+)
ENSDARG00000025073	rpl18a	4: 391297 ~ 398451 (+)
ENSDARG00000045898	si:ch211-152c2.3	4: 842010 ~ 845033 (+)
ENSDARG00000058479	zgc:110425	7: 6469133 ~ 6470431 (-)
ENSDARG00000100024	hist1h2a6	7: 6426736 ~ 6427198 (-)
ENSDARG00000104227	nop10	7: 1505507 ~ 1508912 (+)
ENSDARG00000052082	gabarapb	7: 69470142 ~ 69478567 (+)
ENSDARG00000104011	rps17	7: 54092291 ~ 54098631 (-)
ENSDARG00000105037	snrpf	7: 19374683 ~ 19378024 (+)
ENSDARG00000101637	ccnd1	7: 54668303 ~ 54679595 (-)
ENSDARG00000029500	rpl34	7: 59649399 ~ 59664545 (+)
ENSDARG00000036298	rps13	7: 27041315 ~ 27044013 (+)
ENSDARG00000011201	rplp2l	7: 12959846 ~ 12968701 (-)
ENSDARG00000062326	hmgn7	5: 22969635 ~ 22972775 (+)
ENSDARG00000052907	bcl7a	5: 41793001 ~ 41799882 (+)
ENSDARG00000015524	prps1a	5: 23136544 ~ 23147665 (+)
ENSDARG00000104537	cox7c	5: 47726197 ~ 47727819 (-)
ENSDARG00000034138	shisa2a	5: 22067570 ~ 22070229 (+)
ENSDARG00000041065	hspb1	5: 3568016 ~ 3584815 (-)
ENSDARG00000010770	sox19a	5: 24199180 ~ 24201437 (-)
ENSDARG00000058105	rpl36a	5: 22510639 ~ 22515186 (+)
ENSDARG00000061547	zgc:153409	5: 27429872 ~ 27430247 (+)
ENSDARG00000099499	ndufa4l	3: 20947560 ~ 20957083 (-)
ENSDARG00000015128	rpl27	3: 29893966 ~ 29899230 (-)
ENSDARG00000061478	igf2bp1	3: 23518137 ~ 23575115 (-)
ENSDARG00000077126	snrnp70	3: 31925067 ~ 31933774 (+)
ENSDARG00000053058	rps11	3: 37787229 ~ 37789244 (+)
ENSDARG00000010160	rps15a	3: 26345732 ~ 26351656 (+)
ENSDARG00000077291	rps2	3: 18398876 ~ 18403179 (+)
ENSDARG00000053457	rpl23	3: 33423986 ~ 33427803 (-)
ENSDARG00000052150	pbx4	3: 52999962 ~ 53076469 (+)
ENSDARG00000105116	p4hb	6: 18203464 ~ 18228358 (-)
ENSDARG00000029075	pfkfb4b	6: 39993605 ~ 40029423 (-)
ENSDARG00000021669	sec61a1	6: 40065201 ~ 40071899 (-)
ENSDARG00000040031	tardbp	6: 45937777 ~ 45949121 (-)
ENSDARG00000030408	rps26l	6: 49520124 ~ 49526510 (-)
ENSDARG00000008333	znfl2a	2: 118225 ~ 122164 (-)
ENSDARG00000041435	uba52	2: 56339058 ~ 56348727 (-)
ENSDARG00000035860	rps28	2: 24507597 ~ 24509698 (+)
ENSDARG00000007320	rpl7	2: 30177476 ~ 30182353 (-)
ENSDARG00000075211	chd7	2: 21765670 ~ 21820697 (-)
ENSDARG00000006200	eif4g1a	2: 16798652 ~ 16842699 (+)
ENSDARG00000101766	ptmab	2: 5131964 ~ 5135125 (-)
ENSDARG00000094729	apela	1: 19667947 ~ 19673900 (-)
ENSDARG00000023330	anp32b	1: 26660369 ~ 26664840 (-)
ENSDARG00000093886	tmsb5	1: 18810891 ~ 18811517 (-)
ENSDARG00000029722	hmgb2a	1: 38169512 ~ 38171787 (-)
ENSDARG00000037177	zc3h13	1: 29766725 ~ 29797907 (+)
ENSDARG00000037178	zic2b	1: 29831759 ~ 29860895 (+)
ENSDARG00000056561	asb11	9: 30364667 ~ 30371247 (-)
ENSDARG00000007099	cx43.4	9: 46405587 ~ 46415847 (-)
ENSDARG00000041959	cxcr4b	9: 10692905 ~ 10694930 (+)
ENSDARG00000077777	tmsb4x	9: 54178475 ~ 54180059 (+)
ENSDARG00000101009	cited4b	16: 35535171 ~ 35537491 (+)
ENSDARG00000025789	chd4b	16: 31761825 ~ 31791165 (-)
ENSDARG00000056914	emg1	16: 17254489 ~ 17258111 (-)
ENSDARG00000012505	u2af2a	16: 12812214 ~ 12821768 (+)
ENSDARG00000040295	apoeb	16: 23960744 ~ 23963461 (+)
ENSDARG00000092170	apoc1	16: 23972126 ~ 23973721 (+)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000030602	rps19	16: 24188114 ~ 24195361 (-)
ENSDARG00000005791	rpl28	16: 51883725 ~ 51889734 (-)
ENSDARG00000032866	erh	20: 33493924 ~ 33497128 (-)
ENSDARG00000042566	rps7	20: 30372352 ~ 30377221 (-)
ENSDARG00000041232	rps29	20: 54079341 ~ 54085949 (+)
ENSDARG00000014685	esco2	20: 39344889 ~ 39359154 (+)
ENSDARG00000099022	faua	20: 54201459 ~ 54208344 (-)
ENSDARG00000058454	dynll1	8: 2487250 ~ 2491471 (+)
ENSDARG00000058451	rpl6	8: 2493794 ~ 2506384 (-)
ENSDARG00000022684	fkbp1aa	8: 49169768 ~ 49172500 (-)
ENSDARG00000028295	mkrn4	8: 23725957 ~ 23731213 (+)
ENSDARG00000042905	rpl10a	8: 23738122 ~ 23742985 (+)
ENSDARG00000077811	sox11a	17: 35878544 ~ 35881841 (-)
ENSDARG00000097776	si:ch1073-80i24.3	17: 48943204 ~ 48944465 (-)
ENSDARG00000021124	cfl1	14: 30795559 ~ 30801555 (+)
ENSDARG00000087636	hmgn6	14: 9421510 ~ 9428248 (+)
ENSDARG00000036162	hnrnpa0b	14: 38845674 ~ 38848166 (+)
ENSDARG00000002344	tubb4b	14: 5861435 ~ 5865146 (+)
ENSDARG00000036316	rpl39	14: 33331773 ~ 33348221 (-)
ENSDARG00000043484	ube2d2	14: 7892021 ~ 7901635 (+)
ENSDARG00000012025	hs6st2	14: 31081862 ~ 31087830 (-)
ENSDARG00000015472	gpc4	14: 31090151 ~ 31151148 (-)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000007960	hnrnpaba	14: 6962271 ~ 6968589 (+)
ENSDARG00000068582	rnf44	14: 50918769 ~ 50975568 (+)
ENSDARG00000099859	CR383676.1	14: 45631180 ~ 45631235 (-)
ENSDARG00000052856	khdrbs1a	13: 45009957 ~ 45022527 (-)
ENSDARG00000039347	rps24	13: 30225262 ~ 30235220 (+)
ENSDARG00000039034	marcksl1a	13: 46177478 ~ 46180510 (+)
ENSDARG00000074624	si:ch211-198a12.6	13: 18507592 ~ 18512836 (+)
ENSDARG00000039020	fbxo5	13: 46941930 ~ 46958802 (+)
ENSDARG00000031427	calm2a	13: 8777633 ~ 8785610 (-)
ENSDARG00000032103	mapk6	18: 39170127 ~ 39288894 (-)
ENSDARG00000102832	baz1b	18: 41560822 ~ 41591684 (+)
ENSDARG00000100553	lsm14ab	18: 302796 ~ 325636 (+)
ENSDARG00000056621	ctcf	18: 22285992 ~ 22295064 (+)
ENSDARG00000062506	zc3h18	18: 17076680 ~ 17147803 (-)
ENSDARG00000088030	rpl35a	18: 45781115 ~ 45791224 (+)
ENSDARG00000006413	rpl38	12: 38556462 ~ 38561842 (+)
ENSDARG00000055630	foxh1	12: 13722385 ~ 13730501 (-)
ENSDARG00000091150	mki67	12: 10366617 ~ 10381282 (-)
ENSDARG00000021864	rplp1	19: 1852078 ~ 1855368 (-)
ENSDARG00000011648	snrpd1	19: 1872794 ~ 1877746 (+)
ENSDARG00000023298	rps27.1	19: 8743260 ~ 8748571 (-)
ENSDARG00000067975	atp5if1a	19: 84052 ~ 85593 (-)
ENSDARG00000030449	crabp2b	19: 8973042 ~ 8980038 (+)
ENSDARG00000100392	rps18	19: 18617608 ~ 18627025 (-)
ENSDARG00000010266	igf2bp3	19: 20201254 ~ 20247336 (+)
ENSDARG00000035678	zgc:91910	19: 35013129 ~ 35017047 (+)
ENSDARG00000035871	rpl30	19: 32855139 ~ 32860780 (+)
ENSDARG00000101216	meaf6	19: 4024443 ~ 4033031 (+)
ENSDARG00000004169	stmn1a	19: 17205143 ~ 17210928 (-)
ENSDARG00000035715	marcksl1b	19: 29798064 ~ 29800812 (+)
ENSDARG00000043509	rpl11	19: 43780970 ~ 43786940 (+)
ENSDARG00000030949	srprb	15: 2510761 ~ 2519640 (-)
ENSDARG00000068434	h3f3b.1	15: 47860045 ~ 47865063 (-)
ENSDARG00000055635	crk	15: 24737599 ~ 24744920 (+)
ENSDARG00000097102	si:ch73-281n10.2	15: 5898410 ~ 5901514 (-)
ENSDARG00000043453	rps5	15: 39964943 ~ 39971756 (-)
ENSDARG00000053800	si:ch211-276c2.4	15: 41693635 ~ 41708657 (-)
ENSDARG00000099667	snrpg	23: 33957350 ~ 33961989 (+)
ENSDARG00000025850	rps21	23: 9220436 ~ 9228578 (+)
ENSDARG00000037071	rps26	23: 27675581 ~ 27677516 (+)
ENSDARG00000028335	hmga1a	23: 3751451 ~ 3759692 (-)
ENSDARG00000036875	rps12	23: 31431956 ~ 31435922 (+)
ENSDARG00000077405	psip1b	23: 45200481 ~ 45368589 (+)
ENSDARG00000074201	flna	23: 19759128 ~ 19809027 (+)
ENSDARG00000092807	si:dkey-151g10.6	23: 25305431 ~ 25306603 (+)
ENSDARG00000044485	sall4	23: 38940700 ~ 38952596 (+)
ENSDARG00000006316	rpl23a	21: 26071874 ~ 26074640 (+)
ENSDARG00000057556	rpl17	21: 18997503 ~ 19067517 (+)
ENSDARG00000069422	nhp2	21: 30401784 ~ 30409204 (-)
ENSDARG00000016903	wdr5	21: 18274825 ~ 18290978 (+)
ENSDARG00000104517	uqcr10	21: 5882300 ~ 5885723 (+)
ENSDARG00000018334	rpl35	21: 5873227 ~ 5881344 (-)
ENSDARG00000115557	cox7b	21: 37442458 ~ 37445458 (+)
ENSDARG00000036629	rps14	21: 33454147 ~ 33458430 (+)
ENSDARG00000077717	rpl29	11: 1396170 ~ 1400634 (-)
ENSDARG00000040764	id1	11: 18704191 ~ 18705303 (-)
ENSDARG00000070849	rps15	11: 5926850 ~ 5931622 (+)
ENSDARG00000033175	snrpe	11: 37720552 ~ 37726201 (+)
ENSDARG00000070437	rpl22	11: 29650011 ~ 29658396 (-)
ENSDARG00000076532	si:ch211-222l21.1	11: 40677616 ~ 40696136 (-)
ENSDARG00000070545	top1l	11: 25296366 ~ 25311677 (+)
ENSDARG00000057940	dido1	11: 18531984 ~ 18557929 (-)
ENSDARG00000014329	npm1a	10: 22034477 ~ 22045119 (+)
ENSDARG00000103919	si:ch73-1a9.3	10: 39084354 ~ 39087854 (+)
ENSDARG00000041811	rps25	10: 39125637 ~ 39130935 (-)
ENSDARG00000091937	BX927308.1	22: 27238034 ~ 27239175 (-)
ENSDARG00000019004	smarcd1	22: 7009062 ~ 7025393 (-)
ENSDARG00000043180	gpd1b	22: 6996046 ~ 7006974 (-)
ENSDARG00000100588	rpl36	22: 3153876 ~ 3159456 (+)
ENSDARG00000054818	rpl32	22: 31039091 ~ 31044066 (+)
ENSDARG00000101362	mibp	22: 5118361 ~ 5122557 (+)
ENSDARG00000103754	aspm	22: 23546926 ~ 23582605 (+)
ENSDARG00000010481	bzw1a	22: 14117078 ~ 14126065 (+)
ENSDARG00000089663	lsm3	22: 31660964 ~ 31672566 (-)
ENSDARG00000038505	polr2h	22: 36521139 ~ 36530902 (-)
ENSDARG00000075508	si:dkey-108k21.10	25: 35050385 ~ 35051005 (+)
ENSDARG00000051735	si:ch211-113a14.18	25: 36339867 ~ 36340516 (+)
ENSDARG00000114405	zgc:194989	25: 35105627 ~ 35106783 (-)
ENSDARG00000032637	si:dkey-261m9.12	25: 35141528 ~ 35142127 (-)
ENSDARG00000096992	zgc:153405	25: 35153283 ~ 35153985 (-)
ENSDARG00000063895	mt-nd1	MT: 3803 ~ 4777 (+)
ENSDARG00000063899	mt-nd2	MT: 4993 ~ 6039 (+)
ENSDARG00000063905	mt-co1	MT: 6425 ~ 7975 (+)
ENSDARG00000063908	mt-co2	MT: 8130 ~ 8820 (+)
ENSDARG00000063911	mt-atp6	MT: 9052 ~ 9735 (+)
ENSDARG00000063912	mt-co3	MT: 9735 ~ 10520 (+)
ENSDARG00000063914	mt-nd3	MT: 10590 ~ 10940 (+)
ENSDARG00000063917	mt-nd4	MT: 11299 ~ 12679 (+)
ENSDARG00000063924	mt-cyb	MT: 15308 ~ 16448 (+)
--	calm2b	--
--	rrm2.1	--
--	h2afva	--
--	rpl37.1	--
--	rpl37a	--
--	h2afx1	--
--	hist1h4l.3	--
--	hist1h2a3.2	--
--	hist1h4l.10	--
--	hist1h4l.18	--
--	hist1h4l.23	--
--	rpl26.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Ectoderm cells.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158849 (labeled)	Danio rerio	embryo	1	Ectoderm cells	baseline	6hpf, WT, 4sUTP injected (labeled)	-- (h2afva)	marker	DOI:10.1038/s41467-021-23834-1
GSE158849 (labeled)	Danio rerio	embryo	1	Ectoderm cells	baseline	6hpf, WT, 4sUTP injected (labeled)	ENSDARG00000032866 (erh)	marker	DOI:10.1038/s41467-021-23834-1
GSE158849 (labeled)	Danio rerio	embryo	1	Ectoderm cells	baseline	6hpf, WT, 4sUTP injected (labeled)	ENSDARG00000099859 (CR383676.1)	marker	DOI:10.1038/s41467-021-23834-1
GSE158849 (labeled)	Danio rerio	embryo	5	Ectoderm cells	baseline	6hpf, WT, 4sUTP injected (labeled)	-- (h2afva)	marker	DOI:10.1038/s41467-021-23834-1
GSE158849 (labeled)	Danio rerio	embryo	5	Ectoderm cells	baseline	6hpf, WT, 4sUTP injected (labeled)	ENSDARG00000032866 (erh)	marker	DOI:10.1038/s41467-021-23834-1
GSE158849 (unlabeled)	Danio rerio	embryo	2	Ectoderm cells	baseline	6hpf, WT, 4sUTP injected (unlabeled)	ENSDARG00000041065 (hspb1)	marker	DOI:10.1038/s41467-021-23834-1
GSE158849 (unlabeled)	Danio rerio	embryo	5	Ectoderm cells	baseline	6hpf, WT, 4sUTP injected (unlabeled)	ENSDARG00000041065 (hspb1)	marker	DOI:10.1038/s41467-021-23834-1
PRJNA734348 (shield, control)	Danio rerio	embryo	2	Ectoderm cells	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	ENSDARG00000101009 (cited4b)	marker	DOI:10.1126/sciadv.abl3858
PRJNA734348 (shield, control)	Danio rerio	embryo	2	Ectoderm cells	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	ENSDARG00000056561 (asb11)	marker	DOI:10.1126/sciadv.abl3858

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Ectoderm cells

Distribution of Ectoderm cells in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences