DATASET ID: PRJNA797645

Basic information

Tissue / Organ embryo
Experiment type baseline
Sample 70 hpf, whole embryo, untreatment
Source dataset ID SRR17665713
Project ID PRJNA797645
Species Gasterosteus aculeatus

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    2 Neuron ENSGACG00000018407 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSGACG00000017181 (sox3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neuron ENSGACG00000002784 (jagn1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Mesoderm ENSGACG00000020298 (pcolcea) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Mesoderm ENSGACG00000016468 (foxc1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Muscle cells ENSGACG00000000349 (myog) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Muscle cells ENSGACG00000012875 (hsp90aa1.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSGACG00000018292 (plp1a) protein_coding marker DOI:10.7554/eLife.60005
    7 Glia ENSGACG00000013679 (pou3f1) protein_coding marker DOI:10.7554/eLife.60005
    8 Progenitors ENSGACG00000016665 (ccna2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Progenitors ENSGACG00000012186 (nusap1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSGACG00000013839 (elavl3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSGACG00000013224 (myt1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSGACG00000009065 (sox11a) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    10 Somite ENSGACG00000004901 (angptl7) protein_coding marker DOI:10.1093/g3journal/jkac062
    10 Somite ENSGACG00000002409 (col5a2a) protein_coding marker DOI:10.1093/g3journal/jkac062
    10 Somite ENSGACG00000008558 (comp) protein_coding marker DOI:10.1093/g3journal/jkac062
    11 Epidermal cells ENSGACG00000002632 (epcam) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    11 Epidermal cells ENSGACG00000008104 (krt4) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    11 Epidermal cells ENSGACG00000019298 (myh9a) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    11 Epidermal cells ENSGACG00000020320 (cldn7b) protein_coding marker DOI:10.1016/j.cell.2008.01.025
    13 Neuron ENSGACG00000013839 (elavl3) protein_coding marker DOI:10.7554/eLife.44431
    13 Neuron ENSGACG00000007835 (pax10) protein_coding marker DOI:10.1093/g3journal/jkac062
    14 Erythroid cells ENSGACG00000006807 (alas2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Erythroid cells ENSGACG00000009622 (slc4a1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Erythroid cells ENSGACG00000006837 (nmt1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    15 Fibroblasts ENSGACG00000010957 (tcf21) protein_coding marker DOI:10.15252/embr.202152901
    15 Fibroblasts ENSGACG00000005143 (col1a1a) protein_coding marker DOI:10.15252/embr.202152901
    16 Retina ENSGACG00000019038 (six7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    17 Muscle cells ENSGACG00000004198 (tnnc2) protein_coding marker DOI:10.7554/eLife.60005
    18 Chondrocytes ENSGACG00000014845 (olfml2bb) protein_coding marker DOI:10.1002/jbmr.4042
    19 Neural crest ENSGACG00000018278 (slc2a15b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    20 Hyp ENSGACG00000004914 (dlx2b) protein_coding marker DOI:10.1038/nbt.4103
    21 Macrophages ENSGACG00000001966 (ncf2) protein_coding marker DOI:10.1038/s41559-021-01580-3
    22 Neural crest ENSGACG00000007318 (sox10) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    23 Endothelium ENSGACG00000013350 (pecam1) protein_coding marker DOI:10.1016/j.stemcr.2021.05.014
    23 Endothelium ENSGACG00000010806 (sox7) protein_coding marker DOI:10.1016/j.stemcr.2021.05.014
    24 Enterocytes ENSGACG00000002429 (apoa4a) protein_coding marker DOI:10.1038/s41586-021-03484-5
    25 Epidermal cells ENSGACG00000020076 (cd9b) protein_coding marker DOI:10.1016/j.cell.2008.01.025

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)