DATASET ID: PRJNA754013 (zebrafish)

Basic information

Tissue / Organ hypothalamus
Experiment type baseline
Sample adult, male, female, untreatment
Source dataset ID SRR15422672
Project ID PRJNA754013
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuron ENSDARG00000033655 (stmn1b) protein_coding marker DOI:10.1038/s41559-021-01580-3
    2 Neuron ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1038/s41559-021-01580-3
    3 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1038/s41559-021-01580-3
    4 Ciliated ENSDARG00000058734 (prdx1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    5 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1038/s41559-021-01580-3
    6 Progenitors ENSDARG00000056729 (her4.2) protein_coding marker DOI:10.1038/s41559-021-01580-3
    7 Macrophages ENSDARG00000058389 (ccl19a.1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    8 Oligodendrocyte precursor cells ENSDARG00000033845 (igsf9ba) protein_coding marker DOI:10.1038/s41559-021-01580-3
    9 Endothelium ENSDARG00000035810 (rgcc) protein_coding marker DOI:10.1038/s41559-021-01580-3
    10 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1038/s41559-021-01580-3
    11 Microglia ENSDARG00000092170 (apoc1) protein_coding marker DOI:10.1038/s41559-021-01580-3
    12 Ependymal ENSDARG00000067831 (tbata) protein_coding marker DOI:10.1038/s41559-021-01580-3
    13 Erythroid cells ENSDARG00000071361 (si:ch211-197g15.10) protein_coding marker DOI:10.1038/s41559-021-01580-3
    14 Lymphocyte cells ENSDARG00000102100 (mrc1a) protein_coding marker DOI:10.1038/s41559-021-01580-3
    15 Oligodendrocytes ENSDARG00000077257 (timd4) protein_coding marker DOI:10.1038/s41559-021-01580-3

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)