Fish Single-cell RNA Database

GENE ID: ENSDARG00000090428

Symbol	Location	Gene type	Genome version	Species
ctrb1	7: 35075847 ~ 35079299 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000090428 (ctrb1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000074547	si:ch211-240l19.8	4: 8029968 ~ 8030583 (-)
ENSDARG00000090428	ctrb1	7: 35075847 ~ 35079299 (+)
ENSDARG00000007276	ela3l	5: 26111596 ~ 26118855 (-)
ENSDARG00000013856	amy2a	2: 15612755 ~ 15626972 (+)
ENSDARG00000102129	crygn1	2: 51783120 ~ 51815413 (+)
ENSDARG00000042993	prss1	16: 25080764 ~ 25085327 (-)
ENSDARG00000056765	ela2l	8: 21366771 ~ 21372485 (-)
ENSDARG00000056744	ela2	8: 21376290 ~ 21381734 (+)
ENSDARG00000053862	crygmx	12: 30838167 ~ 30841679 (-)
ENSDARG00000068680	ctrl	15: 37820258 ~ 37829160 (-)
ENSDARG00000029822	cel.2	21: 11385031 ~ 11393979 (+)
ENSDARG00000017490	cel.1	21: 11401247 ~ 11411365 (+)
ENSDARG00000007715	lgsn	11: 11263451 ~ 11266882 (-)
ENSDARG00000068507	crybb1	10: 44021147 ~ 44027391 (-)
ENSDARG00000024548	cryba4	10: 44042033 ~ 44051808 (+)
ENSDARG00000045442	cpb1	24: 4755391 ~ 4765740 (-)
ENSDARG00000017314	cela1.6	22: 7439186 ~ 7447391 (+)
ENSDARG00000059015	lim2.2	22: 3223489 ~ 3232634 (+)
ENSDARG00000043175	cela1.1	22: 7462997 ~ 7470338 (+)
ENSDARG00000043168	cela1.5	22: 7497319 ~ 7508894 (+)
ENSDARG00000112287	zgc:66156	22: 254390 ~ 263117 (-)
ENSDARG00000030915	cpa1	25: 18448186 ~ 18454016 (-)
ENSDARG00000021339	cpa5	25: 18459924 ~ 18470695 (-)
ENSDARG00000043722	cpa4	25: 16582172 ~ 16589461 (-)
ENSDARG00000010146	cpa2	25: 16590636 ~ 16600811 (-)
--	zgc:65811	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Pancreas exocrine cells (cluster: 4)	marker	DOI:10.1038/nbt.4124
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Heart primordium (cluster: 2)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Pancreatic cells (cluster: 6)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Pancreatic cells (cluster: 9)	potential marker	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Pancreatic cells (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Pancreatic cells (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000090428

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences