Fish Single-cell RNA Database

GENE ID: ENSDARG00000089706

Symbol	Location	Gene type	Genome version	Species
si:ch211-276a23.5	7: 15341333 ~ 15370042 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000089706 (si:ch211-276a23.5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000089706	si:ch211-276a23.5	7: 15341333 ~ 15370042 (-)
ENSDARG00000036809	NA	7: 15373412 ~ 15413188 (-)
ENSDARG00000090035	rtn4r	5: 10765611 ~ 10946379 (-)
ENSDARG00000077028	si:ch211-81n22.1	6: 55819038 ~ 55831138 (+)
ENSDARG00000061981	lap3	1: 19418380 ~ 19431510 (-)
ENSDARG00000087054	ggt1l2.2	1: 58242498 ~ 58257899 (+)
ENSDARG00000091254	si:ch73-59p9.2	1: 58400409 ~ 58415954 (+)
ENSDARG00000075055	ggt1l2.1	1: 58332000 ~ 58346871 (+)
ENSDARG00000005085	ggctb	16: 53685812 ~ 53709101 (+)
ENSDARG00000070426	chac1	20: 28266892 ~ 28269462 (+)
ENSDARG00000018953	gclm	8: 15269423 ~ 15277252 (+)
ENSDARG00000052045	ggt5a	8: 39998467 ~ 40031011 (+)
ENSDARG00000023526	ggt1a	8: 40042632 ~ 40075983 (-)
ENSDARG00000079932	zgc:152830	8: 41229233 ~ 41256529 (+)
ENSDARG00000078991	si:ch211-195e19.1	13: 11674764 ~ 11679486 (-)
ENSDARG00000013095	gclc	13: 2357637 ~ 2392664 (+)
ENSDARG00000055078	chac2	12: 24056000 ~ 24060358 (-)
ENSDARG00000076406	ggcta	19: 1878500 ~ 1881108 (+)
ENSDARG00000021383	naalad2	15: 43906043 ~ 43942064 (+)
ENSDARG00000037706	gss	23: 14743087 ~ 14769523 (-)
ENSDARG00000018342	ggt1b	10: 41624711 ~ 41664427 (-)
ENSDARG00000078258	CABZ01049847.1	10: 41549819 ~ 41609165 (+)
ENSDARG00000103878	anpepb	25: 10811551 ~ 10827771 (+)
ENSDARG00000097285	NA	25: 10830269 ~ 10841591 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Myeloid cells (cluster: 6) Myeloid cells (cluster: 8) Epidermal cells (cluster: 9)	potential marker potential marker potential marker	NA NA NA
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Myeloid cells (cluster: 4)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 19)	potential marker	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	Neutrophils (cluster: 5)	potential marker	NA
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	Neutrophils (cluster: 6)	potential marker	NA
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	Neutrophils (cluster: 6)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Leukocytes (cluster: 27)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Monocytes (cluster: 24)	potential marker	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Macrophages (cluster: 15) Myeloid cells (cluster: 17)	potential marker potential marker	NA NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Macrophages (cluster: 11) Myeloid cells (cluster: 15)	potential marker potential marker	NA NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Immune cells (cluster: 10) Immune cells (cluster: 5)	potential marker potential marker	NA NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Neutrophils (cluster: 31) Macrophages (cluster: 42)	potential marker potential marker	NA NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	Neutrophils (cluster: 6) Macrophages (cluster: 7)	potential marker potential marker	NA NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	Neutrophils (cluster: 7)	potential marker	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Neutrophils (cluster: 5) Macrophages (cluster: 7)	potential marker potential marker	NA NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Macrophages (cluster: 7)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Macrophages (cluster: 10)	potential marker	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000089706

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences