Fish Single-cell RNA Database

GENE ID: ENSDARG00000018342

Symbol	Location	Gene type	Genome version	Species
ggt1b	10: 41624711 ~ 41664427 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000018342 (ggt1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000079216	dpep2	7: 35268054 ~ 35282097 (+)
ENSDARG00000089706	si:ch211-276a23.5	7: 15341333 ~ 15370042 (-)
ENSDARG00000036809	NA	7: 15373412 ~ 15413188 (-)
ENSDARG00000068181	dpep1	7: 56615554 ~ 56637406 (+)
ENSDARG00000038980	txndc12	2: 9592319 ~ 9607879 (-)
ENSDARG00000061981	lap3	1: 19418380 ~ 19431510 (-)
ENSDARG00000056510	gstk1	16: 32009203 ~ 32013929 (-)
ENSDARG00000005085	ggctb	16: 53685812 ~ 53709101 (+)
ENSDARG00000070426	chac1	20: 28266892 ~ 28269462 (+)
ENSDARG00000043511	prdx6	20: 15164482 ~ 15184869 (+)
ENSDARG00000074308	lrrc75ba	8: 40080728 ~ 40163247 (+)
ENSDARG00000079932	zgc:152830	8: 41229233 ~ 41256529 (+)
ENSDARG00000013302	gpx8	8: 40177361 ~ 40183197 (-)
ENSDARG00000030357	zgc:66313	17: 43863708 ~ 43888569 (+)
ENSDARG00000062598	ltc4s	14: 16370063 ~ 16379843 (-)
ENSDARG00000104068	gstp1	14: 3507326 ~ 3514055 (+)
ENSDARG00000013095	gclc	13: 2357637 ~ 2392664 (+)
ENSDARG00000045123	oplah	12: 13652361 ~ 13721912 (+)
ENSDARG00000076533	nfe2l1b	12: 28854410 ~ 28866095 (+)
ENSDARG00000055078	chac2	12: 24056000 ~ 24060358 (-)
ENSDARG00000076406	ggcta	19: 1878500 ~ 1881108 (+)
ENSDARG00000026348	csad	23: 36424768 ~ 36441693 (-)
ENSDARG00000037706	gss	23: 14743087 ~ 14769523 (-)
ENSDARG00000038207	aldh4a1	11: 41936435 ~ 41960276 (+)
ENSDARG00000018342	ggt1b	10: 41624711 ~ 41664427 (-)
ENSDARG00000091128	lrrc75bb	10: 41668483 ~ 41735503 (+)
ENSDARG00000103878	anpepb	25: 10811551 ~ 10827771 (+)
--	mgst3	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 10)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000018342

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences