Fish Single-cell RNA Database

GENE ID: ENSDARG00000076052

Symbol	Location	Gene type	Genome version	Species
sez6l2	3: 15232181 ~ 15264732 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000076052 (sez6l2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000026875	tlcd3ba	3: 21044154 ~ 21062778 (-)
ENSDARG00000027749	hirip3	3: 15193521 ~ 15210491 (-)
ENSDARG00000044769	kctd13	3: 15213980 ~ 15227666 (-)
ENSDARG00000076052	sez6l2	3: 15232181 ~ 15264732 (-)
ENSDARG00000087330	maza	3: 21096027 ~ 21118969 (-)
ENSDARG00000070686	cdipt	3: 21125293 ~ 21137362 (-)
ENSDARG00000074899	taok2a	3: 21138540 ~ 21185016 (-)
ENSDARG00000075813	asphd1	3: 15271943 ~ 15284693 (+)
ENSDARG00000078736	doc2a	3: 15550522 ~ 15608166 (+)
ENSDARG00000011665	aldoaa	3: 39566999 ~ 39577052 (+)
ENSDARG00000054610	coro1a	3: 30926364 ~ 30941362 (-)
ENSDARG00000055510	ypel3	3: 26186153 ~ 26191960 (-)
ENSDARG00000074466	gdpd3a	3: 26193592 ~ 26204867 (-)
ENSDARG00000070570	ppp4ca	3: 26236279 ~ 26244256 (-)
ENSDARG00000078075	ilrun	6: 54325008 ~ 54348568 (-)
ENSDARG00000061590	cachd1	6: 31590751 ~ 31739709 (-)
ENSDARG00000010318	srpx	9: 30294073 ~ 30316790 (+)
ENSDARG00000075685	tlr7	9: 54039006 ~ 54126873 (+)
ENSDARG00000022939	ino80e	16: 10413551 ~ 10422490 (+)
ENSDARG00000034559	srpx2	14: 35442511 ~ 35462148 (-)
ENSDARG00000015759	tspan7	14: 41469478 ~ 41478392 (-)
ENSDARG00000102624	kif22	12: 5048044 ~ 5071836 (+)
ENSDARG00000076966	pagr1	12: 3723650 ~ 3732014 (+)
ENSDARG00000100620	taok2b	12: 3789114 ~ 3840664 (-)
ENSDARG00000076439	ppp4cb	12: 3964351 ~ 3978342 (-)
ENSDARG00000044781	bace2	15: 6459847 ~ 6493615 (+)
ENSDARG00000014652	ankrd13b	15: 28482862 ~ 28539650 (+)
ENSDARG00000062471	tafa4b	11: 17596979 ~ 17713987 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Neuron (cluster: 23)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000076052

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences