Fish Single-cell RNA Database

GENE ID: ENSDARG00000052223

Symbol	Location	Gene type	Genome version	Species
rcvrna	3: 50441444 ~ 50443607 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000052223 (rcvrna), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000018329	gc2	7: 51267478 ~ 51300277 (-)
ENSDARG00000036344	calb2b	7: 24681278 ~ 24699985 (-)
ENSDARG00000104685	grk1b	5: 54161362 ~ 54197084 (-)
ENSDARG00000019752	rom1a	5: 67126774 ~ 67145505 (-)
ENSDARG00000026820	gucy2d	5: 38123633 ~ 38161033 (-)
ENSDARG00000060846	cabp7b	5: 32086448 ~ 32092856 (-)
ENSDARG00000078272	NA	5: 11502578 ~ 11573490 (-)
ENSDARG00000052223	rcvrna	3: 50441444 ~ 50443607 (-)
ENSDARG00000014320	gucy2c	3: 3765831 ~ 3798755 (-)
ENSDARG00000005559	pou4f1	6: 4539953 ~ 4543005 (+)
ENSDARG00000011886	pdca	2: 20882954 ~ 20890429 (-)
ENSDARG00000020602	grk7a	2: 16536453 ~ 16544343 (+)
ENSDARG00000058803	grk1a	1: 245076 ~ 258138 (+)
ENSDARG00000060264	si:dkey-37g12.1	1: 41886830 ~ 41924484 (+)
ENSDARG00000044875	crygm2e	9: 22080122 ~ 22080989 (+)
ENSDARG00000076790	crygm2d16	9: 22157282 ~ 22158325 (-)
ENSDARG00000078189	crygm3	9: 22354281 ~ 22361681 (-)
ENSDARG00000031598	calb1	16: 36765934 ~ 36798783 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000005574	vsx2	17: 31652640 ~ 31659670 (-)
ENSDARG00000098051	opn6b	17: 28760586 ~ 28770800 (-)
ENSDARG00000055534	grk7b	18: 41740742 ~ 41754020 (-)
ENSDARG00000041062	calb2a	18: 21198762 ~ 21218851 (-)
ENSDARG00000096519	irbpl	12: 2660733 ~ 2663471 (+)
ENSDARG00000059163	rbp3	12: 2665081 ~ 2670156 (+)
ENSDARG00000002576	cabp5a	12: 3848109 ~ 3861759 (+)
ENSDARG00000056045	si:ch73-139e5.4	12: 19065679 ~ 19091214 (-)
ENSDARG00000031751	npr1a	19: 26423590 ~ 26629117 (+)
ENSDARG00000070666	rhol	11: 19095431 ~ 19097746 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	Retina (cluster: 10)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Retina (cluster: 11)	potential marker	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Rod opsin (cluster: 11) Rod opsin (cluster: 9)	potential marker potential marker	NA NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Rod (cluster: 5)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000052223

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences