Fish Single-cell RNA Database

GENE ID: ENSDARG00000060797

Symbol	Location	Gene type	Genome version	Species
pfkmb	6: 39737408 ~ 39765546 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000060797 (pfkmb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000001953	pfkfb3	4: 25472505 ~ 25485404 (-)
ENSDARG00000045858	tigarb	4: 5156117 ~ 5161877 (+)
ENSDARG00000021366	fbp1a	5: 44833313 ~ 44843738 (-)
ENSDARG00000012366	fbp2	5: 44814064 ~ 44829719 (-)
ENSDARG00000020364	fbp1b	5: 35458190 ~ 35462126 (+)
ENSDARG00000011665	aldoaa	3: 39566999 ~ 39577052 (+)
ENSDARG00000076754	slc9a7	6: 37529383 ~ 37600648 (+)
ENSDARG00000060797	pfkmb	6: 39737408 ~ 39765546 (-)
ENSDARG00000029075	pfkfb4b	6: 39993605 ~ 40029423 (-)
ENSDARG00000012801	pfkpb	2: 48119494 ~ 48171441 (-)
ENSDARG00000053222	asb5b	1: 38804961 ~ 38816685 (-)
ENSDARG00000060504	pfkla	9: 52628899 ~ 52678995 (-)
ENSDARG00000053684	aldob	14: 21106444 ~ 21121199 (+)
ENSDARG00000039136	cox16	13: 36311894 ~ 36319308 (-)
ENSDARG00000103826	gpib	18: 402048 ~ 423921 (+)
ENSDARG00000103369	taldo1	18: 50795174 ~ 50799510 (-)
ENSDARG00000034470	aldoab	12: 4052180 ~ 4070058 (-)
ENSDARG00000057661	aldoca	15: 16079586 ~ 16098531 (-)
ENSDARG00000014179	pfkma	23: 27553786 ~ 27571667 (-)
ENSDARG00000037140	pfkfb1	23: 26017227 ~ 26037969 (+)
ENSDARG00000074457	si:dkey-96f10.1	23: 12682353 ~ 12788262 (-)
ENSDARG00000023840	pfkfb2a	23: 42765700 ~ 42810664 (-)
ENSDARG00000019702	aldocb	21: 39608637 ~ 39639954 (-)
ENSDARG00000002037	pfkfb2b	11: 18784847 ~ 18800299 (-)
ENSDARG00000055540	pfkfb4a	11: 34555036 ~ 34577106 (-)
ENSDARG00000028000	pfkpa	24: 3963684 ~ 4004537 (+)
ENSDARG00000040874	add3a	22: 30046365 ~ 30270469 (+)
ENSDARG00000030786	mpi	25: 3035384 ~ 3047644 (+)
ENSDARG00000051749	tigara	25: 16962972 ~ 16969922 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	Muscle cells (cluster: 11)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 17) Skeletal muscle cells (cluster: 20)	potential marker potential marker	NA NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 19)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Muscle cells (cluster: 16)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Heart primordium (cluster: 5)	potential marker	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Red cones (cluster: 7)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000060797

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences