Fish Single-cell RNA Database

GENE ID: ENSDARG00000087144

Symbol	Location	Gene type	Genome version	Species
fam183a	6: 34138386 ~ 34141935 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000087144 (fam183a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000059472	arhgap31	5: 67671207 ~ 67721368 (-)
ENSDARG00000018958	nrarpb	5: 66025336 ~ 66028729 (-)
ENSDARG00000068130	spaca9	5: 29669938 ~ 29671617 (-)
ENSDARG00000087210	vwa3a	3: 58354852 ~ 58372651 (+)
ENSDARG00000006514	her6	6: 36551083 ~ 36552844 (-)
ENSDARG00000087144	fam183a	6: 34138386 ~ 34141935 (-)
ENSDARG00000102746	tmem39a	1: 39313 ~ 44565 (-)
ENSDARG00000043973	znf292b	20: 196541 ~ 211920 (-)
ENSDARG00000063553	rlf	17: 24590177 ~ 24602512 (+)
ENSDARG00000016763	znf292a	17: 49415354 ~ 49438873 (-)
ENSDARG00000018956	tmem39b	13: 33268657 ~ 33281310 (+)
ENSDARG00000056438	her9	23: 23399520 ~ 23401305 (-)
ENSDARG00000063089	ccm2l	23: 9035578 ~ 9084866 (+)
ENSDARG00000079307	si:dkey-205h13.1	23: 26503876 ~ 26523026 (-)
ENSDARG00000030022	nup188	21: 4540127 ~ 4606386 (+)
ENSDARG00000021582	dynlrb1	11: 26604224 ~ 26608636 (+)
ENSDARG00000091419	nrarpa	10: 10860759 ~ 10864331 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 10)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000087144

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences