Fish Single-cell RNA Database

GENE ID: ENSDARG00000040306

Symbol	Location	Gene type	Genome version	Species
otomp	2: 41504752 ~ 41518340 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000040306 (otomp), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000096762	si:dkey-61p9.11	4: 77590387 ~ 77602685 (-)
ENSDARG00000068460	otog	7: 39463050 ~ 39537292 (-)
ENSDARG00000074739	slitrk3b	2: 36815484 ~ 36819624 (-)
ENSDARG00000001771	otol1a	2: 6303639 ~ 6316167 (+)
ENSDARG00000001721	oc90	2: 42942552 ~ 42960353 (-)
ENSDARG00000060210	d2hgdh	2: 41546271 ~ 41562868 (-)
ENSDARG00000040306	otomp	2: 41504752 ~ 41518340 (-)
ENSDARG00000002168	tra2b	9: 12579077 ~ 12595003 (-)
ENSDARG00000015543	s100a1	16: 29385565 ~ 29387215 (-)
ENSDARG00000112794	taar13c	20: 46202188 ~ 46203215 (+)
ENSDARG00000044016	myo6a	20: 715739 ~ 777219 (+)
ENSDARG00000019353	sparc	14: 25937948 ~ 25956860 (-)
ENSDARG00000021566	NA	14: 49602 ~ 58161 (+)
ENSDARG00000088750	otogl	18: 6155258 ~ 6265533 (+)
ENSDARG00000078123	slitrk3a	18: 1703984 ~ 1706599 (+)
ENSDARG00000045268	tectb	12: 31476169 ~ 31484677 (-)
ENSDARG00000035694	stm	19: 3137518 ~ 3167878 (-)
ENSDARG00000058960	otol1b	15: 1705167 ~ 1711472 (+)
ENSDARG00000056910	CU234171.1	23: 17899226 ~ 17907404 (+)
ENSDARG00000055539	epdl2	21: 28513057 ~ 28523548 (-)
ENSDARG00000061835	zpld1a	10: 29112756 ~ 29120535 (-)
--	oxld1	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	Placode (cluster: 13)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	Optic vesicle (cluster: 14)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Otic vesicle (cluster: 14)	marker	DOI:10.1016/j.neuron.2020.09.023
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	Otic (cluster: 10)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000040306

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences