Fish Single-cell RNA Database

GENE ID: ENSDARG00000002597

Symbol	Location	Gene type	Genome version	Species
pabpc1l	8: 45334255 ~ 45352219 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000002597 (pabpc1l), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000008454	cpeb1b	7: 48240707 ~ 48251235 (-)
ENSDARG00000057328	cth1	7: 17947217 ~ 17950315 (+)
ENSDARG00000017315	larp7	7: 59572379 ~ 59589566 (-)
ENSDARG00000042892	paip1	5: 8684652 ~ 8711157 (-)
ENSDARG00000014565	eif4e1b	5: 67785991 ~ 67799821 (-)
ENSDARG00000011597	atxn2l	3: 15394428 ~ 15425689 (+)
ENSDARG00000076847	tnrc6c1	3: 34258755 ~ 34337969 (-)
ENSDARG00000010194	eif4bb	6: 39064824 ~ 39080701 (-)
ENSDARG00000067669	zglp1	6: 153146 ~ 158614 (+)
ENSDARG00000006200	eif4g1a	2: 16798652 ~ 16842699 (+)
ENSDARG00000102634	parn	1: 59314675 ~ 59324539 (+)
ENSDARG00000008706	paip2b	1: 41465771 ~ 41472087 (+)
ENSDARG00000074286	hint3	16: 40024883 ~ 40031779 (+)
ENSDARG00000070430	chtopb	16: 28881235 ~ 28887159 (+)
ENSDARG00000061040	pum2	20: 6089507 ~ 6131824 (-)
ENSDARG00000002597	pabpc1l	8: 45334255 ~ 45352219 (+)
ENSDARG00000061169	larp1b	17: 26753967 ~ 26802816 (+)
ENSDARG00000059131	spdya	17: 24809221 ~ 24815220 (+)
ENSDARG00000077012	eif4ea	14: 43577164 ~ 43586150 (-)
ENSDARG00000005355	larp6a	18: 173603 ~ 194844 (+)
ENSDARG00000012718	wee2	18: 20560442 ~ 20565982 (+)
ENSDARG00000104170	si:dkey-208k4.2	19: 18310386 ~ 18313381 (-)
ENSDARG00000036214	dazl	19: 20389104 ~ 20403871 (-)
ENSDARG00000074675	pan2	23: 31979602 ~ 32007818 (+)
ENSDARG00000078401	larp4aa	23: 27511709 ~ 27547931 (-)
ENSDARG00000025386	lsm14b	23: 553396 ~ 567183 (+)
ENSDARG00000074331	eif4g3b	23: 21978584 ~ 22060520 (+)
ENSDARG00000017439	eif4ba	23: 10396842 ~ 10453077 (+)
ENSDARG00000101722	larp1	21: 45856443 ~ 45871866 (-)
ENSDARG00000031637	pan3	24: 21720304 ~ 21748700 (+)
ENSDARG00000045932	cpeb1a	25: 6065011 ~ 6082509 (-)
--	papd4	--
--	setd8b	--
--	wu:fb16f03	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	Thyrotropes (cluster: 8)	potential marker	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	Thyrotropes (cluster: 9)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000002597

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences