Fish Single-cell RNA Database

GENE ID: ENSDARG00000018004

Symbol	Location	Gene type	Genome version	Species
nkx2.5	14: 24241241 ~ 24244034 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000018004 (nkx2.5), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000017078	mespaa	7: 15308042 ~ 15333427 (+)
ENSDARG00000057527	mef2ab	7: 15659280 ~ 15712421 (+)
ENSDARG00000061769	bmp10	5: 21211135 ~ 21214299 (+)
ENSDARG00000092060	tbx5b	5: 23151169 ~ 23161715 (+)
ENSDARG00000004023	isl1	5: 40728613 ~ 40734045 (-)
ENSDARG00000024894	tbx5a	5: 72264192 ~ 72289648 (-)
ENSDARG00000002216	tbx3a	5: 72316803 ~ 72324371 (-)
ENSDARG00000009418	mef2cb	5: 48179340 ~ 48307804 (-)
ENSDARG00000104722	myl2a	5: 1589458 ~ 1611199 (+)
ENSDARG00000103589	gata6	2: 4207209 ~ 4217887 (+)
ENSDARG00000079564	myh7	2: 24252987 ~ 24270062 (-)
ENSDARG00000008305	hand2	1: 38193147 ~ 38195012 (-)
ENSDARG00000005150	tbx20	16: 42509011 ~ 42523744 (-)
ENSDARG00000098952	gata4	20: 52952116 ~ 52967878 (-)
ENSDARG00000090637	myh6	20: 53577502 ~ 53583436 (+)
ENSDARG00000041799	cx43	20: 40715163 ~ 40720530 (-)
ENSDARG00000053424	myl2b	8: 4333914 ~ 4359475 (+)
ENSDARG00000019096	myl7	8: 40457107 ~ 40464935 (-)
ENSDARG00000052960	nppa	8: 48613040 ~ 48617664 (+)
ENSDARG00000019995	bmp4	17: 50564070 ~ 50586135 (+)
ENSDARG00000018004	nkx2.5	14: 24241241 ~ 24244034 (+)
ENSDARG00000039806	tbxtb	13: 4439074 ~ 4453663 (+)
ENSDARG00000026225	nsd2	13: 12993851 ~ 13030851 (-)
ENSDARG00000102867	srfb	13: 51909828 ~ 51922290 (-)
ENSDARG00000008133	foxl1	18: 17483557 ~ 17485419 (-)
ENSDARG00000031756	mef2aa	18: 23187419 ~ 23356077 (+)
ENSDARG00000061685	hcn4	18: 1004814 ~ 1143998 (-)
ENSDARG00000055630	foxh1	12: 13722385 ~ 13730501 (-)
ENSDARG00000036168	nfatc1	19: 22216778 ~ 22304534 (+)
ENSDARG00000006120	tbx2b	15: 27364394 ~ 27371340 (+)
ENSDARG00000036930	tbx18	23: 31107685 ~ 31118371 (+)
ENSDARG00000020610	tnnt2a	23: 5653224 ~ 5685172 (-)
ENSDARG00000017821	gata5	23: 7379728 ~ 7391028 (+)
ENSDARG00000059327	gata2a	11: 3847442 ~ 3865472 (-)
ENSDARG00000029764	mef2ca	10: 43544814 ~ 43655449 (-)
ENSDARG00000053918	srfa	22: 35089031 ~ 35124655 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Differentiated art.CMs (cluster: 2) More-differentiated SHFPs (cluster: 3)	potential marker potential marker	NA NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	More-differentiated SHFPs (cluster: 3)	potential marker	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	Cardiac mesoderm (cluster: 5)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Heart primordium (cluster: 30)	potential marker	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	Heart primordium (cluster: 18)	potential marker	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	Pectoral fin (cluster: 9)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (1.25dpf)	embryo	baseline	1.25dpf, FACS sorted sox10:nEOS cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000018004

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences