Fish Single-cell RNA Database

GENE ID: ENSDARG00000022813

Symbol	Location	Gene type	Genome version	Species
dnd1	14: 7397804 ~ 7409364 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000022813 (dnd1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000079578	rbpms2b	7: 48252638 ~ 48263633 (-)
ENSDARG00000007349	dmrt1	5: 44944778 ~ 44991344 (+)
ENSDARG00000035435	m17	5: 32155141 ~ 32158242 (-)
ENSDARG00000059972	raly	6: 50021410 ~ 50204262 (-)
ENSDARG00000096095	buc	2: 27855102 ~ 27859558 (+)
ENSDARG00000038271	zgc:113293	2: 205763 ~ 211064 (+)
ENSDARG00000032808	tdrd7a	1: 12195700 ~ 12228116 (+)
ENSDARG00000075916	zgc:66472	1: 43988715 ~ 44001011 (-)
ENSDARG00000068255	nanos3	1: 55247370 ~ 55248496 (-)
ENSDARG00000078754	gra	16: 16222394 ~ 16226180 (-)
ENSDARG00000077377	si:dkey-85n7.6	20: 27240388 ~ 27283820 (+)
ENSDARG00000056089	nrbp1	20: 26002534 ~ 26024924 (+)
ENSDARG00000062794	trim36	8: 391590 ~ 410770 (-)
ENSDARG00000041699	piwil1	8: 44224693 ~ 44299247 (-)
ENSDARG00000094516	es1	8: 4838114 ~ 4850816 (+)
ENSDARG00000022813	dnd1	14: 7397804 ~ 7409364 (-)
ENSDARG00000007960	hnrnpaba	14: 6962271 ~ 6968589 (+)
ENSDARG00000109337	nanos1	14: 5117072 ~ 5119497 (+)
ENSDARG00000013453	tdrd9	13: 31402067 ~ 31423346 (+)
ENSDARG00000040510	ca15b	12: 4294923 ~ 4301376 (-)
ENSDARG00000036214	dazl	19: 20389104 ~ 20403871 (-)
ENSDARG00000004956	zmat2	21: 30293564 ~ 30300049 (+)
ENSDARG00000014373	ddx4	10: 6884123 ~ 6905574 (+)
ENSDARG00000061956	sytl2a	10: 29259882 ~ 29264023 (+)
ENSDARG00000045371	prdm14	24: 14451404 ~ 14456103 (+)
--	acrc	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 14)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000022813

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences