Fish Single-cell RNA Database

GENE ID: ENSDARG00000039569

Symbol	Location	Gene type	Genome version	Species
emx1	13: 15004398 ~ 15010683 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000039569 (emx1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000034300	sema3c	4: 22613625 ~ 22652944 (+)
ENSDARG00000068650	fam214b	5: 19021786 ~ 19052497 (-)
ENSDARG00000046140	zgc:112038	3: 21200763 ~ 21218133 (+)
ENSDARG00000061257	NA	3: 26331243 ~ 26342005 (-)
ENSDARG00000074794	necab3	6: 57541776 ~ 57620500 (+)
ENSDARG00000037383	pax5	1: 21725821 ~ 21815554 (+)
ENSDARG00000061885	satb2	9: 32560399 ~ 32604414 (-)
ENSDARG00000004712	tbr1b	9: 51427826 ~ 51436377 (-)
ENSDARG00000000189	sema6e	16: 30002605 ~ 30271444 (+)
ENSDARG00000073814	pax1b	20: 48694056 ~ 48701593 (-)
ENSDARG00000116556	im:7142702	20: 4392687 ~ 4454794 (+)
ENSDARG00000088699	pdzd8	17: 23820450 ~ 23895026 (-)
ENSDARG00000070769	foxg1a	17: 29117027 ~ 29119362 (-)
ENSDARG00000062510	bcl11ba	17: 18117029 ~ 18180747 (+)
ENSDARG00000008203	pax1a	17: 42274240 ~ 42278340 (+)
ENSDARG00000069832	sfxn4	13: 9831010 ~ 9841806 (-)
ENSDARG00000075730	dnph1	13: 4218329 ~ 4223955 (-)
ENSDARG00000039569	emx1	13: 15004398 ~ 15010683 (+)
ENSDARG00000103595	sfxn5a	13: 15020822 ~ 15082024 (-)
ENSDARG00000028148	pax2a	13: 29770837 ~ 29805529 (+)
ENSDARG00000006640	eomesa	19: 860830 ~ 874888 (-)
ENSDARG00000043134	cux1b	15: 2520319 ~ 2543834 (+)
ENSDARG00000078459	cux1a	10: 32898533 ~ 33156789 (-)
ENSDARG00000055349	pknox2	10: 31019607 ~ 31220558 (-)
ENSDARG00000058821	sema5a	24: 16393302 ~ 16706981 (+)
ENSDARG00000074070	irx5b	25: 36152215 ~ 36157484 (+)
ENSDARG00000078962	duox2	25: 31944165 ~ 31953516 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 11)	potential marker	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 13)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 10)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 12)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000039569

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences