|
Dataset ID |
Tissue / Organ |
Experiment type |
Sample |
Cell type |
Marker class |
Evidence |
|
PRJNA656271 (2dpf) |
embryo |
baseline |
2dpf, FACS-isolated EGFP+ cells |
Pre-myelinating oligodendrocyte (cluster: 4)
|
potential marker
|
NA
|
|
PRJNA415636 (brain) |
brain |
baseline |
adult, Zebrabow M, brain |
|
|
|
|
PRJNA554650 (6.5dpf) |
brain |
baseline |
6.5dpf, whole brain of nr1d1:VNP fish |
|
|
|
|
GSE151354 (wild type) |
cartilage |
baseline |
21dpf, wild type |
|
|
|
|
GSE151354 (nkx3.2 mutant) |
cartilage |
growth |
21dpf, nkx3.2 mutant |
|
|
|
|
PRJNA610520 (3.5dpf) |
caudal hematopoietic tissue |
baseline |
3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
|
|
|
|
GSE144944 (fgfr3 -|-) |
cranial vault |
growth |
1mpf, fgfr3 -/- |
|
|
|
|
GSE144944 (fgfr3 +|+) |
cranial vault |
baseline |
1mpf, fgfr3 +/+ |
|
|
|
|
GSE130526 (fin) |
dorsal and anal fin |
baseline |
adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry |
|
|
|
|
PRJNA706197 (24hpf) |
embryo |
baseline |
24hpf, FACS sorted sox10:nEOS cells |
|
|
|
|
GSE126647 (control) |
embryo |
baseline |
1.17dpf, control nkx2.5:ZsYellow+ cells |
|
|
|
|
PRJNA564810 (2dpf) |
embryo |
baseline |
2dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
PRJNA706197 (1.25dpf) |
embryo |
baseline |
1.25dpf, FACS sorted sox10:nEOS cells |
|
|
|
|
PRJNA640816 (2.9dpf) |
embryo |
baseline |
2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
|
|
|
|
GSE168695 (5dpf) |
embryo |
baseline |
5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
|
|
|
|
GSE173972 (WT, ezh1+|+) |
embryo |
baseline |
1.25dpf, Kdrl-positive embryos |
|
|
|
|
PRJNA656271 (24hpf) |
embryo |
baseline |
24hpf, FACS-isolated EGFP+ cells |
|
|
|
|
GSE126647 (Pbx4-depleted) |
embryo |
growth |
1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells |
|
|
|
|
PRJNA564810 (1dpf) |
embryo |
baseline |
1dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
PRJNA706197 (18hpf) |
embryo |
baseline |
18hpf, FACS sorted sox10:nEOS cells |
|
|
|
|
PRJNA706197 (20hpf) |
embryo |
baseline |
20hpf, FACS sorted sox10:nEOS cells |
|
|
|
|
GSE173972 (HET, ezh1+|-) |
embryo |
hematopoietic |
1.25dpf, Kdrl-positive embryos |
|
|
|
|
PRJNA564810 (5dpf) |
embryo |
baseline |
5dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
GSE161712 (M. marinum) |
granulomas |
disease |
adult, infected with bacteria of M. marinum |
|
|
|
|
PRJNA608912 (wt_2dpi) |
heart |
regeneration |
5mpf, wild type, 2 days post injury |
|
|
|
|
PRJNA608912 (kit_14dpi) |
heart |
regeneration |
5mpf, kit mutant, 14 days post injury |
|
|
|
|
PRJNA608912 (kit_2dpi) |
heart |
regeneration |
5mpf, kit mutant, 2 days post injury |
|
|
|
|
PRJNA608912 (wt_7dpi) |
heart |
regeneration |
5mpf, wild type, 7 days post injury |
|
|
|
|
PRJNA608912 (kit_7dpi) |
heart |
regeneration |
5mpf, kit mutant, 7 days post injury |
|
|
|
|
PRJNA608912 (wt_14dpi) |
heart |
regeneration |
5mpf, wild type, 14 days post injury |
|
|
|
|
PRJNA608912 (wt_unjuried) |
heart |
baseline |
5mpf, wild type, uninjured |
|
|
|
|
PRJNA608912 (kit_uninjuried) |
heart |
regeneration |
5mpf, kit mutant, uninjured |
|
|
|
|
PRJNA415636 (heart, blood) |
heart, blood |
baseline |
adult, Zebrabow M, heart and blood |
|
|
|
|
PRJNA754013 (zebrafish) |
hypothalamus |
baseline |
adult, male, female, untreatment |
|
|
|
|
GSE150498 (nod2-|-, 2X DSS) |
intestine |
disease |
6dpf, nod2-/-, 2X DSS |
|
|
|
|
GSE150498 (nod2-|-, 1X DSS) |
intestine |
disease |
6dpf, nod2-/-, 1X DSS |
|
|
|
|
GSE150498 (wildtype, untreated) |
intestine |
baseline |
6dpf, wildtype, untreated |
|
|
|
|
GSE150498 (nod2-|-, 2X DSS+BZA) |
intestine |
disease |
6dpf, nod2-/-, 2X DSS+BZA |
|
|
|
|
GSE150498 (wildtype, 2X DSS) |
intestine |
disease |
6dpf, wildtype, 2X DSS |
|
|
|
|
GSE150498 (nod2-|-, untreated) |
intestine |
disease |
6dpf, nod2-/-, untreated |
|
|
|
|
GSE150498 (wildtype, 2X DSS+BZA) |
intestine |
disease |
6dpf, wildtype, 2X DSS+BZA |
|
|
|
|
GSE150498 (wildtype, 1X DSS) |
intestine |
disease |
6dpf, wildtype, 1X DSS |
|
|
|
|
GSE150498 (untreated ctrl) |
intestine |
baseline |
6dpf, untreated ctrl |
|
|
|
|
GSE137784 (HCC, HepABC) |
liver |
disease |
6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC |
|
|
|
|
GSE137784 (HCC, CreLox) |
liver |
disease |
6mpf, male, isolated from the zebrafish without HCC |
|
|
|
|
PRJNA605021 (hair cells) |
neuromast |
baseline |
7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
|
|
|
|
GSE123241 (fgf3 mutants) |
neuromast |
regeneration |
5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory |
|
|
|
|
PRJNA605021 (supporting cells) |
neuromast |
baseline |
7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
|
|
|
|
PRJNA668529 (control) |
olfactory rosette |
baseline |
3mpf, intranasal PBS |
|
|
|
|
PRJNA668529 (3d) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 days |
|
|
|
|
PRJNA668529 (3h) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 hours |
|
|
|
|
PRJNA415636 (primary pancreatic islet) |
primary pancreatic islet |
baseline |
adult, Zebrabow M, primary pancreatic islet |
|
|
|
|
GSE175929 (5mpf) |
retina |
baseline |
5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
|
|
|
|
GSE122680 (24hpf) |
retina |
baseline |
24hpf, WT, untreatment |
|
|
|
|
GSE122680 (1.5dpf) |
retina |
baseline |
1.5dpf, WT, untreatment |
|
|
|
|
GSE122680 (14dpf) |
retina |
baseline |
14dpf, WT, untreatment |
|
|
|
|
PRJNA551501 (8mpf) |
thyroid gland |
baseline |
8mpf, Tg(tg:mVenus-T2A-NTR) |
|
|
|
|
PRJNA551501 (2mpf) |
thyroid gland |
baseline |
2mpf, Tg(tg:mVenus-T2A-NTR) |
|
|
|
|
GSE152982 (wild type) |
trunk |
baseline |
1.25dpf, untreatment |
|
|
|
|
GSE163907 (24hpf) |
trunk |
baseline |
24hpf, trunk tg(sox10:GFP) positive cells |
|
|
|
|
GSE131136 (all) |
trunk, skin |
baseline |
5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
|
|
|
|
PRJNA641144 (C_INV) |
tumor |
disease |
adult, ZMEL1-INV cells in vitro co-culture |
|
|
|
|
PRJNA641144 (M_INV) |
tumor |
disease |
adult, ZMEL1-INV cells in vivo metastases |
|
|
|
|
PRJNA641144 (M_PRO) |
tumor |
disease |
adult, ZMEL1-PRO cells in vivo metastases |
|
|
|
|
PRJNA641144 (P_INV) |
tumor |
disease |
adult, ZMEL1-INV cells in vivo primary tumors |
|
|
|
|
PRJNA641144 (D_INV) |
tumor |
disease |
adult, ZMEL1-INV cells in vitro individual culture |
|
|
|
|
PRJNA641144 (P_PRO) |
tumor |
disease |
adult, ZMEL1-PRO cells in vivo primary tumors |
|
|
|
|
GSE158099 (WT) |
whole body |
baseline |
16dpf, cd41:GFPlow-WT |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
2.5dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (WT) |
whole body |
baseline |
6dpf, cd41:GFPlow-WT |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
6dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (WT) |
whole body |
baseline |
2.5dpf, cd41:GFPlow-WT |
|
|
|
|
GSE176129 (pdgfrb-positive) |
whole body |
baseline |
5dpf, FACS-isolated pdgfrb-positive cells |
|
|
|
: marker.