Fish Single-cell RNA Database

GENE ID: ENSDARG00000041685

Symbol	Location	Gene type	Genome version	Species
si:dkey-105h12.2	15: 21220744 ~ 21239416 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000041685 (si:dkey-105h12.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000093876	si:dkey-28d5.10	7: 4897673 ~ 4899598 (+)
ENSDARG00000093673	si:dkey-28d5.4	7: 4795707 ~ 4797562 (+)
ENSDARG00000051890	hp	7: 56577522 ~ 56585738 (+)
ENSDARG00000096619	si:ch211-1f22.10	1: 56955349 ~ 56960001 (+)
ENSDARG00000094524	si:ch211-1f22.11	1: 56972616 ~ 56981521 (+)
ENSDARG00000096623	si:ch211-1f22.13	1: 57004178 ~ 57008386 (+)
ENSDARG00000077874	vwa10.1	1: 40291054 ~ 40307806 (+)
ENSDARG00000017984	zgc:172106	1: 55293424 ~ 55299173 (+)
ENSDARG00000096625	si:ch211-286b5.8	1: 55304374 ~ 55310703 (+)
ENSDARG00000069710	vwa10.2	1: 40308077 ~ 40329641 (+)
ENSDARG00000054655	si:ch211-1f22.5	1: 56823437 ~ 56827882 (+)
ENSDARG00000096656	si:ch211-1f22.6	1: 56852400 ~ 56857465 (+)
ENSDARG00000034910	si:ch211-152f2.2	1: 56873359 ~ 56878634 (+)
ENSDARG00000087148	CR788255.1	1: 55452892 ~ 55453752 (+)
ENSDARG00000015592	c1ql2	9: 844221 ~ 849069 (-)
ENSDARG00000040944	ntd5	16: 13568697 ~ 13595027 (-)
ENSDARG00000100599	c1s	16: 31676281 ~ 31686602 (-)
ENSDARG00000100248	c1r	16: 31662256 ~ 31675736 (-)
ENSDARG00000102898	mtf1	16: 4132537 ~ 4168888 (+)
ENSDARG00000058053	serping1	8: 13960655 ~ 13972626 (-)
ENSDARG00000043079	NA	8: 53928472 ~ 53946034 (+)
ENSDARG00000009825	mmp23bb	18: 45990394 ~ 46005179 (+)
ENSDARG00000041685	si:dkey-105h12.2	15: 21220744 ~ 21239416 (-)
ENSDARG00000090969	cbln18	15: 556956 ~ 568645 (-)
ENSDARG00000091712	si:dkey-238d18.5	15: 37891045 ~ 37921998 (-)
ENSDARG00000057113	c6	21: 20914888 ~ 20932603 (-)
ENSDARG00000057121	c7b	21: 20901505 ~ 20915291 (+)
ENSDARG00000041828	si:dkeyp-28d2.4	24: 12894282 ~ 12918330 (+)
--	cfi	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Hepatocytes (cluster: 11)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000041685

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences