Fish Single-cell RNA Database

GENE ID: ENSDARG00000013963

Symbol	Location	Gene type	Genome version	Species
mipb	23: 6637611 ~ 6641223 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000013963 (mipb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000053480	aqp9b	7: 30371893 ~ 30390376 (+)
ENSDARG00000003808	aqp3a	5: 43006422 ~ 43011814 (+)
ENSDARG00000004082	cx39.9	5: 23630384 ~ 23635908 (+)
ENSDARG00000100349	prkacaa	3: 49459828 ~ 49504023 (-)
ENSDARG00000011998	bfsp2	2: 32761130 ~ 32769759 (-)
ENSDARG00000023713	aqp1a.1	2: 2737422 ~ 2749333 (+)
ENSDARG00000102129	crygn1	2: 51783120 ~ 51815413 (+)
ENSDARG00000016809	prkacab	1: 55843552 ~ 55873178 (-)
ENSDARG00000073750	crygm2d18	9: 22120874 ~ 22122637 (-)
ENSDARG00000069451	gja8a	9: 30430188 ~ 30432778 (-)
ENSDARG00000041171	crygs2	9: 27733334 ~ 27738110 (-)
ENSDARG00000018797	crygmxl1	9: 22056172 ~ 22057658 (-)
ENSDARG00000041925	cryba2b	9: 11554089 ~ 11560432 (-)
ENSDARG00000041295	lim2.5	16: 50166421 ~ 50181206 (-)
ENSDARG00000079687	rnf10	8: 41256612 ~ 41273768 (-)
ENSDARG00000023309	spryd4	8: 21159122 ~ 21162762 (+)
ENSDARG00000017773	slc16a12a	17: 23578316 ~ 23596969 (+)
ENSDARG00000101432	rab11fip2	13: 19610562 ~ 19642288 (-)
ENSDARG00000074919	NA	13: 985442 ~ 992458 (-)
ENSDARG00000100555	aqp11	18: 3157911 ~ 3166726 (-)
ENSDARG00000045141	aqp8a.1	12: 20366109 ~ 20373058 (-)
ENSDARG00000053862	crygmx	12: 30838167 ~ 30841679 (-)
ENSDARG00000015445	lim2.4	19: 10537443 ~ 10554352 (-)
ENSDARG00000058678	aqp10b	19: 7810028 ~ 7816886 (+)
ENSDARG00000037402	lim2.3	15: 19646902 ~ 19660757 (+)
ENSDARG00000045944	slc6a1a	23: 4834447 ~ 4855122 (-)
ENSDARG00000013963	mipb	23: 6637611 ~ 6641223 (-)
ENSDARG00000026787	aqp7	21: 12010505 ~ 12021593 (+)
ENSDARG00000053875	cryba1b	21: 39185461 ~ 39195314 (+)
ENSDARG00000068507	crybb1	10: 44021147 ~ 44027391 (-)
ENSDARG00000069608	palm2akap2	10: 4874542 ~ 4911001 (+)
ENSDARG00000043279	aqp12	22: 2874838 ~ 2886937 (-)
ENSDARG00000059015	lim2.2	22: 3223489 ~ 3232634 (+)
ENSDARG00000042992	crygs1	22: 11710467 ~ 11714158 (-)
ENSDARG00000002988	tnnt2d	25: 20215964 ~ 20226584 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Lens (cluster: 25)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Lens (cluster: 23)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Lens (cluster: 29)	potential marker	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	Lens (cluster: 17)	potential marker	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	Horizontal cells (cluster: 9)	potential marker	NA
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000013963

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences