Fish Single-cell RNA Database

GENE ID: ENSDARG00000042970

Symbol	Location	Gene type	Genome version	Species
gng8	21: 25231160 ~ 25235926 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042970 (gng8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000035357	gnb2	5: 38263240 ~ 38297391 (+)
ENSDARG00000037921	gng13b	3: 35589212 ~ 35602233 (-)
ENSDARG00000043094	gnas	6: 49811831 ~ 49873020 (-)
ENSDARG00000069669	adra2c	1: 40992682 ~ 40994259 (-)
ENSDARG00000024101	adra1d	1: 41957210 ~ 41982582 (-)
ENSDARG00000036272	gcgrb	1: 56344651 ~ 56363108 (-)
ENSDARG00000004358	gnb3a	16: 12022543 ~ 12049762 (+)
ENSDARG00000077145	adcy3a	16: 2515223 ~ 2558653 (-)
ENSDARG00000017437	adcy3b	20: 46651916 ~ 46693942 (+)
ENSDARG00000102096	adra2b	8: 40644838 ~ 40646418 (+)
ENSDARG00000058246	cysltr1	14: 10450216 ~ 10462758 (+)
ENSDARG00000016085	mbnl3	14: 30986754 ~ 31080183 (-)
ENSDARG00000079399	NA	14: 36869273 ~ 36878988 (+)
ENSDARG00000052775	opn3	13: 42245221 ~ 42265585 (+)
ENSDARG00000039534	rrh	13: 12528043 ~ 12540539 (+)
ENSDARG00000016676	gnao1a	18: 22793465 ~ 22975655 (+)
ENSDARG00000045039	kcnj16	12: 36267761 ~ 36268723 (-)
ENSDARG00000038278	ptgir	15: 9117330 ~ 9184449 (+)
ENSDARG00000087798	pdyn	23: 41799748 ~ 41802335 (+)
ENSDARG00000027797	adcy6b	23: 26797035 ~ 26888217 (-)
ENSDARG00000037964	lhx2a	21: 8407545 ~ 8422363 (-)
ENSDARG00000042970	gng8	21: 25231160 ~ 25235926 (+)
ENSDARG00000079472	NA	21: 5846969 ~ 5856050 (-)
ENSDARG00000044862	opn1lw1	11: 25477643 ~ 25480037 (+)
ENSDARG00000044861	opn1lw2	11: 25481046 ~ 25483206 (+)
ENSDARG00000061355	aoc1	24: 40001290 ~ 40009446 (-)
ENSDARG00000016364	gna15.1	22: 22021936 ~ 22036307 (+)
ENSDARG00000100869	adcy9	22: 26600834 ~ 26697254 (+)
ENSDARG00000099685	gnb5a	25: 4837915 ~ 4851181 (+)
--	ano2	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Dorsal habenula (cluster: 9)	marker	DOI:10.1038/nbt.4103
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	Dorsal habenula (cluster: 6)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	Dorsal habenula (cluster: 10)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Epidermal cells (cluster: 15)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	Ionocyte progenitors (cluster: 6)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Mucous secreting cells (cluster: 24)	potential marker	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Microvillus olfactory sensory neuron (cluster: 8)	potential marker	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Microvillus olfactory sensory neuron (cluster: 5)	potential marker	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	Microvillus olfactory sensory neuron (cluster: 3)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000042970

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences