Fish Single-cell RNA Database

GENE ID: ENSDARG00000019713

Symbol	Location	Gene type	Genome version	Species
oatx	21: 44091342 ~ 44104600 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000019713 (oatx), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000104108	slco1d1	4: 77389668 ~ 77432218 (-)
ENSDARG00000044301	atf1	6: 39505565 ~ 39521832 (-)
ENSDARG00000058953	abcc4	6: 7322587 ~ 7390458 (+)
ENSDARG00000097651	tgm8	6: 60036767 ~ 60041033 (+)
ENSDARG00000016818	abcg2d	1: 50566256 ~ 50590626 (-)
ENSDARG00000032010	slc15a2	9: 37320222 ~ 37339656 (+)
ENSDARG00000100315	slc15a1a	9: 1137430 ~ 1162804 (+)
ENSDARG00000009018	rhbg	16: 29265796 ~ 29277164 (-)
ENSDARG00000056659	ttbk1b	17: 22032296 ~ 22067451 (-)
ENSDARG00000076241	txlnbb	17: 6358160 ~ 6382392 (-)
ENSDARG00000044073	fuca2	17: 6438051 ~ 6451801 (-)
ENSDARG00000043395	crip3	17: 21964472 ~ 21982835 (+)
ENSDARG00000018773	hivep2b	17: 6393719 ~ 6399920 (-)
ENSDARG00000100075	abcg2a	23: 45906137 ~ 45936357 (+)
ENSDARG00000019713	oatx	21: 44091342 ~ 44104600 (-)
ENSDARG00000056028	slc22a7a	11: 30729745 ~ 30742966 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Pigment cell (neural crest derived) (cluster: 7)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000019713

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences