Fish Single-cell RNA Database

GENE ID: ENSDARG00000070597

Symbol	Location	Gene type	Genome version	Species
prelp	11: 21076872 ~ 21086254 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070597 (prelp), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000056938	kera	4: 16337156 ~ 16345227 (-)
ENSDARG00000045580	lum	4: 16349042 ~ 16354292 (-)
ENSDARG00000053362	cilp	7: 31432140 ~ 31441420 (-)
ENSDARG00000077583	b4gat1	7: 7466049 ~ 7474597 (-)
ENSDARG00000104042	b4galt4	5: 67736822 ~ 67762434 (-)
ENSDARG00000089769	hapln1a	5: 46490622 ~ 46505702 (-)
ENSDARG00000015374	st3gal3a	6: 3334392 ~ 3405495 (+)
ENSDARG00000015252	st3gal3b	2: 17266759 ~ 17393971 (-)
ENSDARG00000077994	b4galt2	2: 33476766 ~ 33676494 (-)
ENSDARG00000003903	hapln2	16: 29303971 ~ 29308947 (+)
ENSDARG00000010301	b4galt6	20: 6163932 ~ 6196989 (-)
ENSDARG00000058100	b3gnt3.4	8: 13630492 ~ 13641022 (-)
ENSDARG00000091902	b3gnt2b	17: 24036791 ~ 24082364 (+)
ENSDARG00000039064	st3gal7	13: 40716319 ~ 40726865 (-)
ENSDARG00000078790	lrrc18a	13: 31002658 ~ 31005889 (+)
ENSDARG00000041006	st3gal4	18: 48696094 ~ 48745517 (-)
ENSDARG00000112898	st3gal2	18: 18612388 ~ 18631082 (+)
ENSDARG00000040815	tsku	15: 29343280 ~ 29354020 (-)
ENSDARG00000062329	b4galt3	23: 19984808 ~ 20010579 (-)
ENSDARG00000044895	fmoda	11: 21025895 ~ 21031773 (-)
ENSDARG00000070597	prelp	11: 21076872 ~ 21086254 (+)
ENSDARG00000089564	NA	11: 22109887 ~ 22169026 (+)
ENSDARG00000068516	hapln1b	10: 43269918 ~ 43334999 (-)
ENSDARG00000058585	chst2b	24: 5784264 ~ 5786759 (-)
ENSDARG00000038489	b3gnt7	22: 36656680 ~ 36661461 (+)
ENSDARG00000018542	hapln4	22: 17828267 ~ 17831253 (+)
ENSDARG00000044132	ogna	22: 10454603 ~ 10459880 (-)
ENSDARG00000093600	omd	22: 10463890 ~ 10470663 (-)
ENSDARG00000061357	chst6	25: 34862225 ~ 34870891 (+)
ENSDARG00000088593	chst1	25: 14017609 ~ 14021111 (+)
ENSDARG00000045802	hapln3	25: 19201231 ~ 19205875 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Chondrocytes (cluster: 6)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Chondrocytes (cluster: 2) Chondrocytes (cluster: 5)	potential marker potential marker	NA NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Fibroblasts (cluster: 12)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Chondrocytes (cluster: 15)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Chondrocytes (cluster: 11)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Chondrocytes (cluster: 4)	potential marker	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	Iridophore (cluster: 9)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000070597

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences