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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| chia.1 | 11: 23993298 ~ 24000171 (+) | protein_coding | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Intesinal epithelial cells (cluster: 17) |
potential marker |
NA |
|
| GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl |
Enterocytes (cluster: 4) |
potential marker |
NA |
|
| GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
| GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated |
Brush border cells (cluster: 4) |
potential marker |
NA |
|
| GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS |
Brush border cells (cluster: 2) |
potential marker |
NA |
|
| GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
| GSE150498 (wildtype, 2X DSS) | intestine | disease | 6dpf, wildtype, 2X DSS |
Enterocytes (cluster: 1) |
potential marker |
NA |
|
| GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA |
Brush border cells (cluster: 3) |
potential marker |
NA |
|
| GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS |
Brush border cells (cluster: 2) |
potential marker |
NA |
|
| GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA |
Brush border cells (cluster: 3) |
potential marker |
NA |
|
| PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | ||||
| PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
| GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
| GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
| PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
| PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
| PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
| PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | ||||
| PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | ||||
| PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | ||||
| GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | ||||
| GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | ||||
| GSE158142 (3dpf) | head | baseline | 3dpf, untreatment | ||||
| GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
| GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | ||||
| GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
| GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment | ||||
| PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury | ||||
| GSE150498 (wildtype, untreated) | intestine | baseline | 6dpf, wildtype, untreated | ||||
| GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | ||||
| PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | ||||
| PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | ||||
| PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | ||||
| PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | ||||
| GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment | ||||
| GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment | ||||
| GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment | ||||
| GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
| GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells | ||||
| GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- | ||||
| GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT |