Fish Single-cell RNA Database

GENE ID: ENSDARG00000086221

Symbol	Location	Gene type	Genome version	Species
si:ch211-226h8.4	22: 25184459 ~ 25185570 (+)	protein_coding	GRCz11	Danio rerio

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Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000086221 (si:ch211-226h8.4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000079034	zpax4	7: 20577694 ~ 20582921 (-)
ENSDARG00000116005	zgc:171446	3: 3402223 ~ 3413680 (-)
ENSDARG00000075737	zgc:165518	3: 66842 ~ 79366 (-)
ENSDARG00000074764	zgc:171426	3: 3469600 ~ 3481763 (+)
ENSDARG00000086859	qdprb2	1: 24382651 ~ 24385979 (+)
ENSDARG00000042063	si:ch211-145c1.1	9: 8288268 ~ 8314028 (-)
ENSDARG00000086529	si:dkey-90l23.2	9: 8364553 ~ 8369028 (+)
ENSDARG00000070166	zgc:153499	9: 8407778 ~ 8413219 (+)
ENSDARG00000092090	si:ch211-125e6.12	9: 33216945 ~ 33218269 (+)
ENSDARG00000055415	zp2l1	9: 35631440 ~ 35633827 (-)
ENSDARG00000105043	si:dkey-152b24.6	16: 46576702 ~ 46579981 (-)
ENSDARG00000042129	zp3a.1	20: 33991801 ~ 33993698 (+)
ENSDARG00000042130	zp3a.2	20: 33987465 ~ 33989427 (+)
ENSDARG00000069251	zpax1	20: 43737022 ~ 43743700 (-)
ENSDARG00000032431	mpv17	20: 38671894 ~ 38716529 (+)
ENSDARG00000105346	zp2.2	20: 54290356 ~ 54292173 (+)
ENSDARG00000089966	si:zfos-1505d6.3	20: 54299419 ~ 54301276 (+)
ENSDARG00000114958	zp3	17: 2580541 ~ 2584423 (-)
ENSDARG00000115457	zp3.2	17: 2587132 ~ 2590222 (-)
ENSDARG00000040110	kif20bb	12: 16452575 ~ 16479291 (+)
ENSDARG00000092498	si:dkeyp-46h3.2	19: 27586823 ~ 27588842 (-)
ENSDARG00000094392	si:dkey-229d11.5	21: 43644573 ~ 43666481 (-)
ENSDARG00000093353	si:ch211-263m18.4	21: 43653826 ~ 43656125 (-)
ENSDARG00000070709	wu:fi42e03	11: 29537756 ~ 29540033 (+)
ENSDARG00000027639	zgc:165539	10: 21541925 ~ 21545117 (-)
ENSDARG00000076949	zgc:173837	10: 19595009 ~ 19598009 (+)
ENSDARG00000087961	avd	10: 21359062 ~ 21362320 (-)
ENSDARG00000067859	scospondin	24: 40016889 ~ 40171461 (+)
ENSDARG00000092924	zgc:171474	24: 10010630 ~ 10014624 (-)
ENSDARG00000086221	si:ch211-226h8.4	22: 25184459 ~ 25185570 (+)
ENSDARG00000116290	si:ch211-250e5.16	22: 25753972 ~ 25756668 (+)
ENSDARG00000094154	hist2h3c	25: 35051656 ~ 35052155 (+)
--	ddx41	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000086221

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EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences