Fish Single-cell RNA Database

GENE ID: ENSDARG00000017444

Symbol	Location	Gene type	Genome version	Species
hal	25: 7954140 ~ 7974494 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000017444 (hal), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000007366	NA	7: 19389304 ~ 19401501 (+)
ENSDARG00000101762	fah	7: 10592152 ~ 10632375 (+)
ENSDARG00000002986	gda	5: 25708369 ~ 25723079 (-)
ENSDARG00000103511	zfand2a	3: 43373867 ~ 43397134 (+)
ENSDARG00000062947	amn	3: 56876280 ~ 56877918 (+)
ENSDARG00000028618	krt18b	6: 39360377 ~ 39365467 (+)
ENSDARG00000070394	uroc1	6: 40045035 ~ 40058686 (-)
ENSDARG00000075926	igfn1.2	6: 46743246 ~ 46768040 (-)
ENSDARG00000086028	igfn1.4	6: 46771654 ~ 46790042 (-)
ENSDARG00000097613	igfn1.3	6: 46843592 ~ 46875310 (-)
ENSDARG00000045137	CABZ01084564.1	2: 1174778 ~ 1188707 (-)
ENSDARG00000062009	gpr18	9: 31089649 ~ 31090593 (-)
ENSDARG00000062423	zgc:153901	9: 24208533 ~ 24212884 (+)
ENSDARG00000014916	slc10a2	9: 27339505 ~ 27344683 (+)
ENSDARG00000102888	gpr39	9: 56422311 ~ 56426047 (+)
ENSDARG00000092155	apoc2	16: 23984179 ~ 23994642 (+)
ENSDARG00000074540	gpr63	20: 405811 ~ 411135 (+)
ENSDARG00000062874	hcar1-3	13: 8987957 ~ 8994070 (+)
ENSDARG00000013763	rrbp1a	13: 33611703 ~ 33639050 (-)
ENSDARG00000039269	arg2	13: 33024547 ~ 33034374 (+)
ENSDARG00000076487	haao	13: 8954667 ~ 8982782 (+)
ENSDARG00000075454	hdc	18: 73434 ~ 81280 (-)
ENSDARG00000074628	si:dkey-10o6.2	18: 38209055 ~ 38216584 (-)
ENSDARG00000054584	FO681288.1	18: 48943875 ~ 48953002 (+)
ENSDARG00000057429	arg1	12: 9597151 ~ 9617770 (-)
ENSDARG00000003931	cndp2	19: 20801060 ~ 20823099 (+)
ENSDARG00000059700	agmat	23: 37482727 ~ 37490249 (+)
ENSDARG00000094386	adgrg4b	10: 26634472 ~ 26652593 (+)
ENSDARG00000041703	rrbp1b	22: 25086567 ~ 25137256 (+)
ENSDARG00000007421	ftcd	22: 12770877 ~ 12786532 (+)
ENSDARG00000078828	npb	22: 11535131 ~ 11537654 (+)
ENSDARG00000017444	hal	25: 7954140 ~ 7974494 (-)
ENSDARG00000062949	nt5dc3	25: 18928189 ~ 18948816 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Hepatocytes (cluster: 11)	potential marker	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	Hepatocytes (cluster: 2)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 siblings)	neuromast	regeneration	5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000017444

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences