Fish Single-cell RNA Database

GENE ID: --

Symbol	Location	Gene type	Genome version	Species
cfi	--	--	--	Danio rerio

PPI (protein-protein interaction) results are shown above.

Green is -- (cfi), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000090615	cd59	7: 38695719 ~ 38698664 (-)
ENSDARG00000093876	si:dkey-28d5.10	7: 4897673 ~ 4899598 (+)
ENSDARG00000068261	pros1	1: 343292 ~ 354166 (-)
ENSDARG00000077975	si:ch73-343l4.8	1: 55891376 ~ 55896332 (-)
ENSDARG00000079903	si:ch73-343l4.2	1: 55938565 ~ 55942055 (-)
ENSDARG00000053462	c3a.5	1: 56107522 ~ 56122485 (-)
ENSDARG00000012694	c3a.1	1: 56130222 ~ 56176976 (-)
ENSDARG00000087359	c3a.2	1: 56229674 ~ 56266731 (+)
ENSDARG00000052207	c3a.3	1: 56274613 ~ 56320569 (+)
ENSDARG00000093198	c3a.4	1: 55997173 ~ 56032619 (-)
ENSDARG00000043719	c3a.6	1: 56036644 ~ 56080165 (-)
ENSDARG00000099980	bpifcl	9: 343062 ~ 353894 (+)
ENSDARG00000054941	ldlrad4b	16: 30621684 ~ 30655980 (-)
ENSDARG00000040944	ntd5	16: 13568697 ~ 13595027 (-)
ENSDARG00000100248	c1r	16: 31662256 ~ 31675736 (-)
ENSDARG00000058053	serping1	8: 13960655 ~ 13972626 (-)
ENSDARG00000044414	csmd1a	13: 6342410 ~ 6582725 (+)
ENSDARG00000075730	dnph1	13: 4218329 ~ 4223955 (-)
ENSDARG00000056314	a2ml	15: 21113965 ~ 21132480 (-)
ENSDARG00000041685	si:dkey-105h12.2	15: 21220744 ~ 21239416 (-)
ENSDARG00000015065	c4	15: 32351886 ~ 32383529 (-)
ENSDARG00000090969	cbln18	15: 556956 ~ 568645 (-)
ENSDARG00000093052	c6	21: 20795472 ~ 20840723 (-)
ENSDARG00000057113	c6	21: 20914888 ~ 20932603 (-)
ENSDARG00000057121	c7b	21: 20901505 ~ 20915291 (+)
ENSDARG00000041982	adamts6	10: 11593998 ~ 11761927 (-)
ENSDARG00000001818	c3b.2	22: 26129250 ~ 26175237 (-)
ENSDARG00000093068	c3b.1	22: 26180184 ~ 26236275 (-)
ENSDARG00000024276	pcbp4	22: 32289567 ~ 32507966 (-)
ENSDARG00000100442	cfh	22: 23641801 ~ 23668468 (-)
ENSDARG00000105212	cfhl1	22: 23693195 ~ 23706771 (-)
ENSDARG00000103760	cfhl2	22: 23734001 ~ 23748284 (-)
ENSDARG00000104205	cfhl3	22: 23767557 ~ 23781213 (-)
--	cfi	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	Glia (cluster: 16)	potential marker	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	Glia (cluster: 7)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Rostral blood island (myeloid) (cluster: 15)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	Enteroendocrine (cluster: 6)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Enteroendocrine + ILC3 (cluster: 10) Enteroendocrine (cluster: 5)	potential marker potential marker	NA NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Enteroendocrine (cluster: 4)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Enteroendocrine + ILC3 (cluster: 10) Enteroendocrine (cluster: 6)	potential marker potential marker	NA NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	Neutrophils (cluster: 7)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Chondrocranium cells (cluster: 35)	potential marker	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	Neutrophils (cluster: 9)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: --

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences