GENE ID: --

Symbol Location Gene type Genome version Species
col6a3.1 -- -- -- Danio rerio

MARKER



EXPRESSION

Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Osteoblast (cluster: 1)
 potential marker
 NA
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Chondrocytes (cluster: 3)
 potential marker
 NA
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Cranial neural crest (cluster: 1)
 potential marker
 NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Somites (cluster: 18)
Cranial neural crest (cluster: 19)
 potential marker
potential marker
 NA
NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Somites (cluster: 11)
 potential marker
 NA
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Neutrophils (cluster: 8)
 potential marker
 NA
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured Fibroblasts (cluster: 2)
 potential marker
 NA
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Fibroblasts (cluster: 3)
Fibroblasts (cluster: 7)
 potential marker
potential marker
 NA
NA
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury Fibroblasts (cluster: 10)
Fibroblasts (cluster: 4)
Fibroblasts (cluster: 6)
 potential marker
potential marker
potential marker
 NA
NA
NA
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury Fibroblasts (cluster: 3)
Fibroblasts (cluster: 5)
 potential marker
potential marker
 NA
NA
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured Fibroblasts (cluster: 6)
 potential marker
 NA
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Fibroblasts (cluster: 4)
 potential marker
 NA
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury Fibroblasts (cluster: 4)
Fibroblasts (cluster: 6)
 potential marker
potential marker
 NA
NA
PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury Fibroblasts (cluster: 1)
 potential marker
 NA
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood Fibroblasts (cluster: 6)
 potential marker
 NA
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Smooth muscle cells (cluster: 3)
 potential marker
 NA
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Stromal (cluster: 1)
Stromal (cluster: 2)
 potential marker
potential marker
 NA
NA
PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Stromal (cluster: 1)
Stromal (cluster: 2)
 potential marker
potential marker
 NA
NA
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish
GSE151354 (wild type) cartilage baseline 21dpf, wild type
GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-

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