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NOTE: search by id.

EXAMPLES:

species Danio rerio
tissue pituitary
cell type Erythroid cells
gene ENSDARG00000077809
il13
project GSE158142
dataset GSE158142 (20hpf)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •    
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)

CELL TYPE

  • The folded tree shows the cell types of the species covered by the FishSCT.
  • Click on the node of the fold tree to browse the details of the dataset with that cell type.
  • Check the dataset checkbox for dataset selection for multiple search and visualization.
  • If you only selects cell types and no genes, all marker genes of these cell types will be displayed.
  • Chondrocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Chondrocytes 18
  • Endothelium
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Endothelium 23
  • Enterocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Enterocytes 24
  • Epidermal cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Epidermal cells 11
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Epidermal cells 25
  • Erythroid cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Erythroid cells 14
  • Fibroblasts
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Fibroblasts 15
  • Glia
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Glia 7
  • Hyp
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Hyp 20
  • Macrophages
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Macrophages 21
  • Mesoderm
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Mesoderm 5
  • Muscle cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Muscle cells 6
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Muscle cells 17
  • Neural crest
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Neural crest 19
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Neural crest 22
  • Neuron
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Neuron 2
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Neuron 4
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Neuron 9
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Neuron 13
  • Progenitors
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Progenitors 3
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Progenitors 8
  • Retina
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Retina 16
  • Somite
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      PRJNA797645 70 hpf, whole embryo, untreatment embryo baseline PRJNA797645 Somite 10

  • Click the arrow to add the sample you choose.
  • Support manual input.
  • IDs are separated by  / .

Gene

  • Please fill in the gene ID in FishSCT for multiple search and visualization.
  • If you have symbol, you can quickly search for its ID in FishSCT.
  • Multiple symbols are supported, separated by any punctuation, blank character, or line break.
  • More symbol need more time.
  • If you only selects genes and no cell types, all marker information of these genes will be displayed.

  • Click the arrow to add the gene you choose.
  • Support manual input.
  • Support genes without symbol.
  • IDs are separated by space.


      

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