G245539


Basic Information

Item Value
gene id G245539
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4155797 ~ 4161350 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU278724
TTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCCTCATGTCGTTCCACACCCGTAAGACCTTCATTCATCTTCAGAACACAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTGCATCGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATCATAAAGCGACGAGAATATTTTTGGTGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU278724 True 269 lncRNA 0.36 2 4155797 4161350

Neighbor

gene id symbol gene type direction distance location
CI01000057_04105710_04123101 RANBP3A, RANBP3 coding upstream 32079 4105710 ~ 4123718 (+)
CI01000057_04088057_04092278 CTNS coding upstream 63519 4088057 ~ 4092278 (+)
CI01000057_04029208_04038844 SLC1A6 coding upstream 116887 4029208 ~ 4038910 (+)
CI01000057_04008460_04012934 TAX1BP3.S, TAX1BP3, MGC83163 coding upstream 142822 4008190 ~ 4012975 (+)
CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding upstream 148695 3999611 ~ 4007102 (+)
CI01000057_04202045_04205390 VMAC coding downstream 40422 4201772 ~ 4205479 (+)
CI01000057_04218508_04219283 GA45B, GADD45B, GADD45BA coding downstream 56984 4218334 ~ 4219894 (+)
CI01000057_04357565_04358136 NA coding downstream 196215 4357565 ~ 4359044 (+)
CI01000057_04364304_04364681 NA coding downstream 202604 4359098 ~ 4365796 (+)
CI01000057_04419591_04430486 PDE4C, CRTC1B coding downstream 258241 4419591 ~ 4430486 (+)
G245526 NA non-coding upstream 13570 4141151 ~ 4142227 (+)
G245519 NA non-coding upstream 95209 4060202 ~ 4060588 (+)
G245513 NA non-coding upstream 114308 4041187 ~ 4041489 (+)
G245493 NA non-coding upstream 185728 3969790 ~ 3970069 (+)
G245444 NA non-coding upstream 229492 3919805 ~ 3926305 (+)
G245550 NA non-coding downstream 38888 4200238 ~ 4200458 (+)
G245473 NA non-coding downstream 46589 4207939 ~ 4208938 (+)
G245562 NA non-coding downstream 70099 4231449 ~ 4231683 (+)
G245567 NA non-coding downstream 76388 4237738 ~ 4238188 (+)
G245569 NA non-coding downstream 78202 4239552 ~ 4239760 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 other upstream 311106 3842028 ~ 3844691 (+)
G245401 NA other upstream 617355 3537569 ~ 3538442 (+)
G245231 NA other upstream 863235 3087096 ~ 3292562 (+)
G243991 NA other upstream 1503237 2635237 ~ 2652560 (+)
G243975 NA other upstream 1578945 2576453 ~ 2576852 (+)
G245486 NA other downstream 48547 4209897 ~ 4212081 (+)
G245725 NA other downstream 937335 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1412554 5564489 ~ 5579843 (+)
G245856 NA other downstream 1476304 5637654 ~ 5643340 (+)
G245857 NA other downstream 1493926 5655276 ~ 5657239 (+)

Expression


Co-expression Network