CI01000057_04008460_04012934 (TAX1BP3.S, TAX1BP3, MGC83163)


Basic Information

Item Value
gene id CI01000057_04008460_04012934
gene name TAX1BP3.S, TAX1BP3, MGC83163
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4008190 ~ 4012975 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04008460_04012934.mRNA
GTATAAATGCCCATGAATTAATCCCATAAACATTTACACATGCTCAACTCACAAAAGTGATCAAGTAAAGGAATTAATTAGACGAATATACGAGAGAAGTGTAATGTAGACTTGAGGGTAGGGTGTGTGTAGTGCAGCCCAGCCCCAACATGACACACACAGCCAAAGGGGAGGAATCGAACACAATCACTCACATTGTTATCAGTGAAAATCACTGAAATAAACACCTAGGAGACCCAACCGGTAATAAGTTTTTTCAACGAGCAGAAAATGTCGTTCATACCCGGCCAGCCTGTCACAGCTGTTGTGGTGTGGCCCCTGAGTTTTCCTCAGCAACGAATTGAGATTCAAAAACTACGGGATGGCGATAATTTAATATTAGGATTCAGCATTGGAGGGGGAATCGACCAAGATGCAAGCCAGAATCCATTTTCTGAAGACAAGTCAGACAAGGGAATCTATGTCACACGTGTGTCTAAAGGTGGACCTGCAGAAGTGGCTGGTCTCAGGATAGGAGACAAAATTATGCAGGTGAATGGCTGGGACATGACCATGGTGACACACGATCAGGCACGAAAAAGACTCACTAAGAAGAAAGAAGATGTGGTCAGGCTTCTCATCACTAGAAAATCCCTGGAGGAAGTAGTCAGACAGTCCATGACGCAACACTAATGCAGATCTCAAACACACTCGTTGAGCTAATTGAATGTCTA

Function

symbol description
tax1bp3 Acts upstream of or within convergent extension involved in axis elongation. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Is expressed in brain; eye; heart; and immature eye. Orthologous to human TAX1BP3 (Tax1 binding protein 3).

GO:

id name namespace
GO:0007266 Rho protein signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04008460_04012934.mRNA True 713 mRNA 0.44 5 4008190 4012975

Neighbor

gene id symbol gene type direction distance location
CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding upstream 1088 3999611 ~ 4007102 (+)
CI01000057_03973241_03985010 USHBP1 coding upstream 23133 3973241 ~ 3985057 (+)
CI01000057_03943917_03961522 GTPBP3 coding upstream 46653 3943917 ~ 3961537 (+)
CI01000057_03857470_03880767 DAZAP1 coding upstream 127311 3857470 ~ 3880879 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 coding upstream 164031 3842028 ~ 3844691 (+)
CI01000057_04029208_04038844 SLC1A6 coding downstream 16233 4029208 ~ 4038910 (+)
CI01000057_04088057_04092278 CTNS coding downstream 75082 4088057 ~ 4092278 (+)
CI01000057_04105710_04123101 RANBP3A, RANBP3 coding downstream 92735 4105710 ~ 4123718 (+)
CI01000057_04202045_04205390 VMAC coding downstream 188797 4201772 ~ 4205479 (+)
CI01000057_04218508_04219283 GA45B, GADD45B, GADD45BA coding downstream 205359 4218334 ~ 4219894 (+)
G245493 NA non-coding upstream 38121 3969790 ~ 3970069 (+)
G245444 NA non-coding upstream 81885 3919805 ~ 3926305 (+)
G245441 NA non-coding upstream 89593 3911591 ~ 3918597 (+)
G245359 NA non-coding upstream 100588 3899520 ~ 3907602 (+)
G245439 NA non-coding upstream 109549 3898324 ~ 3898641 (+)
G245513 NA non-coding downstream 28212 4041187 ~ 4041489 (+)
G245519 NA non-coding downstream 47227 4060202 ~ 4060588 (+)
G245526 NA non-coding downstream 128176 4141151 ~ 4142227 (+)
G245539 NA non-coding downstream 142822 4155797 ~ 4161350 (+)
G245550 NA non-coding downstream 187263 4200238 ~ 4200458 (+)
G245401 NA other upstream 469748 3537569 ~ 3538442 (+)
G245231 NA other upstream 715628 3087096 ~ 3292562 (+)
G243991 NA other upstream 1355630 2635237 ~ 2652560 (+)
G243975 NA other upstream 1431338 2576453 ~ 2576852 (+)
G245486 NA other downstream 196922 4209897 ~ 4212081 (+)
G245725 NA other downstream 1085710 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1560929 5564489 ~ 5579843 (+)
G245856 NA other downstream 1624679 5637654 ~ 5643340 (+)
G245857 NA other downstream 1642301 5655276 ~ 5657239 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 misc CM030142.1 CM030142.1 14375995 ~ 14383580 (+)