CI01000057_03943917_03961522 (GTPBP3)


Basic Information

Item Value
gene id CI01000057_03943917_03961522
gene name GTPBP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3943917 ~ 3961537 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03943917_03961522.mRNA
ATCTCTTTCAGTCAAAAGGCTGTTGTGTTCTGTCGGGTCGGAGGATGACACTATCTTCGCCTTGTCGTCGGGTCAGGGCAGGTGTGGGGTGGCGGTGGTTCGGGTCAGTGGTCCGGCATCAGCACACGCTGTCCGCAGTCTGACCCGAGGTTTCCCCGCAGCTCGCACCGCCAGCCTCCGCAGCATCACTCACCCGCAGACCAAAGAGCTGCTGGACCGCGGCCTGGTCCTGTGGTTTCCAGGTCCTGGTAGTTTCACAGGAGAGGACAGTGCAGAGTTTCACATTCACGGGGGTCCTGCTGTCATTAGTGGAGTCTTACAGGCGCTTGGGAGTTTGCCAGGGCTGCGGCCTGCAGAGGCGGGTGAGTTTACCCGACGGGCGTTCTGTGCTGGAAAGTTGGACCTTACAGAAGTAGAGGGTCTAGGTGACCTGATCCATGCAGAGACAGAAGCACAGAGGCGACAGGCTCTCCGACAAATGGCGGGAGACCTGGGCCGCATTTACCAAGACTGGAGTGTTCGGCTTAAACGATGCTTGGCGCACGTAGAGGCATTCATCGACTTCAGTGAGGATGAACTCATAGAGGATGGAATCTTAAATGATGTGGACACAGCTGTTCGGCAGCTGCAGACAGATATGGAAAATCACCTTTCAGATCAGCGGAGAGGAGAGCGTCTGCGCAGCGGTGTTCAGGTGGTCATTGCTGGAAGCACCAATGCGGGCAAGAGCAGCCTGCTCAACATGCTCACTCAGCGTCCTGCTGCCATAGTGTCTGCCACAGCCGGGACCACCAGAGATGTGGTGGAGGTCCCTCTGGACATCGGGGGCTATCCTGTGCTGCTGAGTGACACAGCAGGGCTACGGGACACCACAGACAGTGTGGAGCAGGAGGGCGTCCGGCGCGCCCGTCAGCGGGTGGAGCAGGCAGATCTGTCTCTGGTGGTCATCGATTTGACGCAGCTTCCTTCAGAGCCCCAGCTAGTGCCTGTCTTCCTCAGTGGACACTTGAAGAATATCCTGGAGCAGTCGTCTCACAGGCAGGAGTGCATCCTGATCCTCAACAAAAGTGACCTCATCTCCGCGGAGCACAACCGCAGCATCCAGGCTTCCCTCGAGCAGTCCCCTGATGTTCCTCCTGCATGTTTTTTGTCATGCCAGACCAGGGATGGCCTGGAGGATCTCCTGACTTTATTACACAACAAACTAAAGACTCTGTGTGGCGACCCACTGATCGGCAGCCCTAGTCTGACTCAGACCCGACACCGGACTCACCTGCAGAAGAGCGTCGAGGCTTTACATCAGTACCATCAGTACAAGGACGTGGATCTGGTTCTGGCGGCAGAAGGGCTTCGTTTGGGCCTCTCCAGCCTGGGCAGGATCACTGGTAGAGTCGGTCCTGAGGAAATTTTAGACACCATTTTCAAAGACTTTTGTATTGGGAAATAGAATAAAATAAGGAGA

Function

symbol description
gtpbp3 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within embryonic organ development. Located in mitochondrion. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Used to study mitochondrial metabolism disease. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 23. Orthologous to human GTPBP3 (GTP binding protein 3, mitochondrial).

NR:

description
mitochondrial GTP binding protein 3

GO:

id name namespace
GO:0030488 tRNA methylation biological_process

KEGG:

id description
K03650 mnmE, trmE, MSS1; tRNA modification GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03943917_03961522.mRNA True 1462 mRNA 0.56 8 3943917 3961537

Neighbor

gene id symbol gene type direction distance location
CI01000057_03857470_03880767 DAZAP1 coding upstream 63038 3857470 ~ 3880879 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 coding upstream 99758 3842028 ~ 3844691 (+)
CI01000057_03817584_03827165 CTDSPL3 coding upstream 116752 3817026 ~ 3827165 (+)
CI01000057_03790271_03807327 ARID3A coding upstream 136590 3790189 ~ 3807327 (+)
CI01000057_03752329_03758938 R3HDM4 coding upstream 184808 3751404 ~ 3759109 (+)
CI01000057_03973241_03985010 USHBP1 coding downstream 11704 3973241 ~ 3985057 (+)
CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding downstream 38074 3999611 ~ 4007102 (+)
CI01000057_04008460_04012934 TAX1BP3.S, TAX1BP3, MGC83163 coding downstream 46653 4008190 ~ 4012975 (+)
CI01000057_04029208_04038844 SLC1A6 coding downstream 67671 4029208 ~ 4038910 (+)
CI01000057_04088057_04092278 CTNS coding downstream 126520 4088057 ~ 4092278 (+)
G245444 NA non-coding upstream 17612 3919805 ~ 3926305 (+)
G245441 NA non-coding upstream 25320 3911591 ~ 3918597 (+)
G245359 NA non-coding upstream 36315 3899520 ~ 3907602 (+)
G245439 NA non-coding upstream 45276 3898324 ~ 3898641 (+)
G245346 NA non-coding upstream 91975 3849171 ~ 3851942 (+)
G245493 NA non-coding downstream 8253 3969790 ~ 3970069 (+)
G245513 NA non-coding downstream 79650 4041187 ~ 4041489 (+)
G245519 NA non-coding downstream 98665 4060202 ~ 4060588 (+)
G245526 NA non-coding downstream 179614 4141151 ~ 4142227 (+)
G245539 NA non-coding downstream 194260 4155797 ~ 4161350 (+)
G245401 NA other upstream 405475 3537569 ~ 3538442 (+)
G245231 NA other upstream 651355 3087096 ~ 3292562 (+)
G243991 NA other upstream 1291357 2635237 ~ 2652560 (+)
G243975 NA other upstream 1367065 2576453 ~ 2576852 (+)
G245486 NA other downstream 248360 4209897 ~ 4212081 (+)
G245725 NA other downstream 1137148 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1612367 5564489 ~ 5579843 (+)
G245856 NA other downstream 1676117 5637654 ~ 5643340 (+)
G245857 NA other downstream 1693739 5655276 ~ 5657239 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location