CI01000057_03817584_03827165 (CTDSPL3)


Basic Information

Item Value
gene id CI01000057_03817584_03827165
gene name CTDSPL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3817026 ~ 3827165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03817584_03827165.mRNA
ATATATAAGCCATATCATTCAAGAAGAAAAATGTCACATTAAGGTCTCTAATTTTTATGAAACATTAGGTATTACCATAGTATTACGTTGGCAAATGTCATTAAATAACGTTAAAAAGATATGTTGACAATGGAGAAGTTATTTAAAATCCATGTTTTATTAAGAAAACTAATCACTAAAACTTGTTGTATTGCCAAGAGGTAAATTACATACAGCTTCTAGGCATTTTTCAGAGATGTCAGAAACCTGTCCAGCCAAAAATGACATACTTCTGCAATGAAACAGATGTTTTGTCCTGTCAATGTGACTTCCGCATCACGTTGCGTCGTTGTTCATTTAAGCCCCGCCTACCGCTTCGAGCGTGAGTTCTGACTGGCTAAAGCTCGATTGTGTTTTTTCAGTAGTTTAAACTGAGGTCAGTACGTCTGGAAACAGCGAGAGGAAGCCGATTAACTAAATTCATGGAGATTGACGCGATTTTTGAACTATTACATTATTCCTGAGAGTTTAAAGTGTTTATGCCTGTTGACGACATCGTTTAATCAGGGCTGAGGGAAAATGAGACTTCGCTCAAGAAATATTTTAAATGAAAACCCACAAACGCCGTCCCGCCGCCGTCGAGCCGCACCGGAGACCCCGAGAACACAGACCCCGCTGATCAAGAACCAGGATGAAGTAAAGTGTCTTCAAGACTGCTCAAATCTGGACCCTGATGACGTCCCAACAGCGGCCAAACGTCCACGGAGGAGGAGAAAAGCGTTATCAACTGTTGACAATAAAGAGTCAGATTTCAAGACCCCAGTCCGTCACCTCCGGGAAAGGCATTCCTTATTGAATCCTGCTGCTCGGAGCCTCTACTCCCCTTCAGTTCACTTTCTCACACCACCAAGAGACAGTGAGCATCCAAACACAAGTCCCATCTTCAGTCCTGAACACTGTGTGTTTGGCTACAGCGCTGCCAGCCCTCTTTCAGAGGATGAGGAGAATGAGGAAGTGTTTAGCCCCTTCACGTTTATTAAGAACATTCCGAACCGTTCACAACAGTCCAGACCTGTCTCAGCAGTGCGGGACATTCCACCAAAGACGAGGAGCACACCTGCTGCTACCCTGGTGCTCGATTTGGATGAAACCCTCGTGTTCAGTTCACTCAATGTGATCCCTGACGCAGAATACACCTTCAGTACCCGCTTTCAAGATCACAAGTACAAGGTGTACGTGATCCTCAGACCGTATGTGAAAGAGTTTCTACAAGCCATGACCAAACATTTTGAGATGTTTGTTTACACCTCTGCAAAAAAGGAATATGCAGAAAAGATTGTAGATATATTGGACCCTAATAAAAAGCTCTTTAGACATCGTTTGTATCAGGATGATTGCGCCTGTGTGCTTGGACACTACATTAAAGACTTGACTGTTCTGGAGAGAGACTTGTCAAAGACGGTCATCCTGGACAACGCCCCCCACACTTTCCCATACCACCTGATGAATATGATTCCAATAAAGAGCTGGATTGGAGATCAAGAGGACCGTGAGCTGCAAAAGCTCATTCCATACATGGAGAAACTAGTGCATGTG

Function

symbol description
ctdspl3 Predicted to enable phosphatase activity.

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K17616 CTDSPL2; CTD small phosphatase-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03817584_03827165.mRNA True 1575 mRNA 0.44 10 3817026 3827165

Neighbor

gene id symbol gene type direction distance location
CI01000057_03790271_03807327 ARID3A coding upstream 9699 3790189 ~ 3807327 (+)
CI01000057_03752329_03758938 R3HDM4 coding upstream 57917 3751404 ~ 3759109 (+)
CI01000057_03719251_03750681 NA coding upstream 66225 3719251 ~ 3750801 (+)
CI01000057_03709399_03714556 NA coding upstream 102467 3708944 ~ 3714559 (+)
CI01000057_03692584_03701758 NA coding upstream 114994 3692584 ~ 3702032 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 coding downstream 14863 3842028 ~ 3844691 (+)
CI01000057_03857470_03880767 DAZAP1 coding downstream 30305 3857470 ~ 3880879 (+)
CI01000057_03943917_03961522 GTPBP3 coding downstream 116752 3943917 ~ 3961537 (+)
CI01000057_03973241_03985010 USHBP1 coding downstream 146076 3973241 ~ 3985057 (+)
CI01000057_03999611_04005699 NR2F6, NR2F6A, NR2F6B coding downstream 172446 3999611 ~ 4007102 (+)
G245357 NA non-coding upstream 667 3815633 ~ 3816359 (+)
G245430 NA non-coding upstream 52401 3764311 ~ 3764625 (+)
G245349 NA non-coding upstream 108578 3707828 ~ 3708448 (+)
G245358 NA non-coding upstream 110172 3706357 ~ 3706854 (+)
G245428 NA non-coding upstream 133672 3683154 ~ 3683354 (+)
G245341 NA non-coding downstream 20138 3847303 ~ 3848415 (+)
G245346 NA non-coding downstream 22006 3849171 ~ 3851942 (+)
G245439 NA non-coding downstream 71159 3898324 ~ 3898641 (+)
G245359 NA non-coding downstream 72355 3899520 ~ 3907602 (+)
G245441 NA non-coding downstream 84426 3911591 ~ 3918597 (+)
G245401 NA other upstream 278584 3537569 ~ 3538442 (+)
G245231 NA other upstream 524464 3087096 ~ 3292562 (+)
G243991 NA other upstream 1164466 2635237 ~ 2652560 (+)
G243975 NA other upstream 1240174 2576453 ~ 2576852 (+)
CI01000057_02395285_02396439 NA other upstream 1420544 2394598 ~ 2396561 (+)
G245486 NA other downstream 382732 4209897 ~ 4212081 (+)
G245725 NA other downstream 1271520 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1746739 5564489 ~ 5579843 (+)
G245856 NA other downstream 1810489 5637654 ~ 5643340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003183 ctdspl3 coding NC_007122.7 CM002895.2 5817202 ~ 5836286 (+)