CI01000057_03719251_03750681


Basic Information

Item Value
gene id CI01000057_03719251_03750681
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3719251 ~ 3750801 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_03719251_03750681.mRNA
ATGGCCATTGGAACACAGCTCTATCTGCTGCTGTGGAAAAACTTCACGTACCGCAGGAGAAACAAGGTGTCGTGTCTTTACTCCTCCAGCCGCAAAACACTCTTTGTCAAACACTCTACAGTCCAACTGATTATTGAACTTCTGTGGCCGCTCTTCCTCTTCCTCATCCTCATTGCTGTCCGGCAATCACACCCGCCGTATAAACAGAGCCAGTGTCACTTTCCCAACAAGGCCCTTCCTTCAGCAGGCACACTGGCATGGGTTCAGGGTATCATCTGCAATGTCAACAATCCCTGTTTTCATCACCCCACTGAAGGAGAAACACCCGGACGAGTGAGCAACTTCGACAACTCCATTCTCTCTCGACTTTTGGTCGATATCAGGACTGTCCTGACAATCAGTGGTAACCGGACAGCCCTCTCCGGCCTACAGGACCTGTCGCAGGCAATCCAGAGACTGGGGGAAAGACCTGATGCCTGGCCAAATATTCCGGTTGGAGAGTATCTCAGAGCCAATGAAAGCTTCTCCTCCTTCCTGCGGACAAACACCAGCATCTCCTCAGCATCTGTTGATCAGTTACTGAGGTCACGACTGAACCTACAAGTGGTTTCATTAGCAGGTGGAGGAATGCGTTTGTCTGATATCGTCTGTAATGCTTCACTCTTGGGTCGTTACCTCACGGCTGAGAAAGGAGATTCTTTCCCTGAACTCCAGGGGGCGCTGTGTGCTGTGCCCTCAGATGTTATGCAGAAGGCAGAGCAGATCTTCCTCTCACAGCTGGACTTCAGCAAGATCCTCACGAGAGACAGACTGCAGGCAAACGCGGCTGATCTCCGGCTTATCAGTCGGGCTGTTTCCTCTGTAACTCAGGAACTAGCATCAGTTATGGATGATATCTCTTCTCTGTCTAGTTTCTCAGAGCTGAACTCCGAGATGAGGTTACTGACACCTGAAAACCGCTTAGCACTGCCACGCGAGAGCTTTCGTGCCTTCTCCAGAATCATGTGTGGACACCCAGAGGCAGGGGGAGAGAGAATCCCTTCATTCAACTGGTATGAAGATCAGGACATCAAATCTTTCCTGGGCAGAAACATGTCAGAGGAGACAGACCTTGAAAATAACAACAGCACCACGCCGTTCTGTGAAAACTTGATTCGAAGTCTGGAGTCCAACCCTCTCTCTCGGATTGTGTGGCGAGGCATCAAACCACTGTTCATTGGAAAGCTGTTATACACACCAGACACACCAGTCACCCGTACAGTCATGTCAGAGGTAAACAAAACATTTCAGGACTTCCAGATTCTCAATGATGTGCAGGAGGCGTGGCAGGAAGTGGGTCCCAGAATCAAAACCTTCATGGAGAGCAGTGTAGAAATTCGGCTTCTGCAGGATCTTCTGAGAAGGCCTGAGGTGGCGGTAGTTGTGAACCTACGTCTGGAAAACACCTCTTGGACGGCCTCCCGCATTTCCCGGTTCCTCTCAACCCCTGACCCAGATACACCTCGTAAGGTTGGAGCACCGCCCACTTGGTTAGATCTGTACCAGGATTTAAGCAACACCTTCAGTACTCTGTCAGAACTCACAAAGTGCTTCTCTTCGAATAAAATTGAGGGTCTGGCCACAGAGGGTGAGCTGGTCGAACGAGCCCTGGAGCTGCTGGAAGATCGTCAGTTTTGGGCTGGAATTGTCTTCCTCCTCCCAGACCCTTCATCGTCCTCCCTACCTCCTCATGTCAAGTACAAGATCCGCATGGACATAGACGATGTAACCCGCACAAACAAGATCAAAGACAAGTATATTGAAATGTCCACACGCACACTTAACTTTACAGAGAAATTTATTTATGTAGCGCTTCCATGGTTCATCCGTGTCCTGAATCGCTCGTTGCCTCTGTTTATGACATTGGCGTGGATCTATTCTGTGGCTATGATCATAAAGGGTGTGGTCTACGAGAAAGAAGCTCGTCTAAAGGAGACAATGCGTATCATGGGCCTGAGCTCTGGGATGCTGTGGCTCAGCTGGTTCGTCAGTAGTTACCTGCCCTTCCTGTTCAGCGCTGGACTCCTTATCGCCGCCCTTAAGTGGGGAGATATCTTACCCTACAGTGACCCGGCTGTTGTTTTCTTCTTCCTTACCGCATTTGCTACAGCCACCATCATGCTTTGCTTCCTCATCAGCACGTTCTTCTCACGCGCTAACCTGGCAGCAGCGTGTGGAGGCCTCATTTACTTCACCCTTTACTTGCCGTATGTGCTGTGTGTGGCCTGGAGGGAATATCTGACCAGCACACACAGAATCTTAGCGAGCTTCTTGTCTCCAGTGGCCTTTGGTTTTGGCTGCGAGTATTTCTCTCAGTATGAAGAGCAGGGTGTGGGGATCCAGTGGTTTAACTTGAGATCCAGCCCCATGGAGGGGGACCGCTACAACTTCACCACCTCCATTGTGATGCTGTATGTAGATGCTGTCATTTATGCACTGGCTACTTGGTACATTGAAGCTGTTTTTCCAGGGCAGTATGGGGTCCCCAGACCATGGTATTTTATCTTCCAGCTGAATTACTGGGGCGGGGTTCCATTAGAGGTGGGGTTGCCCATTCCTACAGCACCTAGAGAGGAACAAGATGATCGGATTGAAGCTGAACCGACAAACCTCATTCTGGGAGTTTCCATAAGGAACTTAGTAAAGATTTATAAAAAAGGGGCCAAGCTTGCTGTCAATCACCTTAACATAAAGTTCTATGAGGGCCAAATAACCTCTTTTCTGGGACACAATGGAGCTGGCAAGACAACCACCATGTCCATTCTAACAGGACTGTTTCCTCCCACTGCTGGTACGATATACGTGAAGGGAATGGACATTCGCACAGATATGGACATAATCCGCAGGACTCTGGGAGTTTGTCCCCAGCACAACGTCCTCTTTGACATCCTGACGGTGGAAGAGCATGTGTGGTTCTATGGTCGAATGAAGGGCATGAGCATGGGGGATGTGAAGAAAGAGATAAATTCACTTCTGGAGGATGTGGGCTTACAACACAAACGACACGAGCAGACTAAAAACCTTTCAGGTGGCATGCAAAGGAAACTGTCTGTTGCAATCGCTTTCATAGGTGGGTCTAAGGTTGTGGTCTTGGATGAGCCCACAGCTGGTGTGGATCCCTACTCCCGCCGCGGGATTTGGGACCTTCTGCTCAAATACCGTGAAGGCCGCACCATCATTCTGTCCACACATTACATGGACGAGGCTGATCTTCTCGGTGACCGCATTGCAATCATTTCCCAGGGAAAGCTGTGCTGCTGTGGAACGCCGCTTTTCCTCAAGGCACGTCTTGGTACAGGATACTACCTTACGCTGGTCAAGAGAGAGATGCATAGGACACCCAGCAGCATCAGCACTAGCAAACTCCCTTCAGCTGCAGTAAGCAAGGACAGCGAATCCTCATTAAGTGATGACACAGGATTGGGTAGTGAAGAGAATGGATTTGATGTTGCTGCCCTAATGGCTCTTGCGCAGCAGTACATCTCTGATGCTCAGCTGGTGGAGGACATTGGCAGAGAGGCAGTTATCAACTTGCCCCATGCTGCCTCAGAGGACGGCAGTCTTGCCCTCTTCCTGAACGAACTGGACAAACGGCAGAGCGAGTTTGGCGTGGTCAGTTACGGGTTGTCAGACACCACGTTAGAAGAGATCTTTCTTCGTGTGGCAGAGGAGACAGGTGTGGATGCAGACCCCGAGGAGCTGCCAGCATCTCCAGGCCACCAGGGGGCGCCATCTGAGGACACAGACACAGAGGCCCAGGAGACAGAACCGTTGAGTGGGGATGGTCAGGGTGGCGGTGCCCCTCTCATAGGCTGCTTCCATACATGTCAGCAGCTTCGAGCGCTTTTCACCAAAAGACTGAAGTACACTCTTCGCAGTCGCAGAGGCATTTTTGCACAGATTGTTCTTCCTGCAGTTTTTGTCCTTATCGCTCTACTCTTCAGTCTCATTGTCCCACCCTTTGGGAAATATCCATCCCTGGAGCTCCAGCCGTGGATGTACGGGGAACAGTTCACCTTCTTCAGCAATGATGCCCCACAGGACCCAGCCACACAGAACCTCCTGGATGCCCTGCTAGATCCACCCGGGTTTGGTACTAAATGTATGGAGCCGAGCAGATATGGAGGTTTCTCTCTGGGGGCTAAAAGCTCTCAAGCTGAGGATGAACCACATCACCTGGAGGAGTCTGTTTTGGCTATTAGAAGACGCTACAACGTTGCAGAGGTCTGGTTTAATAATAAAGGATGGCATGCCATGGCATCATTTGTGAATATTATGAACAATGGTCTCCTTCGTGCCAACTTGCCGCCTGACGTGGAAAGACGCAGATATGGAATAACAGCCTACAATCACCCGCTCAACCTCACGAAGGAGCAGCTGACGGAGATGGCCCTGATGACCACTTCAGTGGACGTTCTGGTGTCCATATGTGTTATTTTCGCCATGTCATTTGTTCCTGCCAGTTTTGTGCTCTTCCTTATTGAGGAACGGGTCAGTAAATCAAAACATCTGCAGTTTGTCAGTGGAGTGAAACCCATCCTGTACTGGACTACCAATTACTTATGGGACATGTTGAACTATACAGTACCAGCCACTATGGTGGTCTTCATCTTCATCAGCTTCCAGCAGGAATCATATGTGTCTGAGAAGAATCTACCTGCACTGGTGCTCCTACTGTTGCTGTATGGTTGGTCTATCACTCCACTCATGTACCCAGCCTCCTTCATCTTCTCAGTCCCCAGCACTGCCTATGTGGTCCTTACCTCCATCAACCTCTTCATTGGCATCAATGGCAGTGTCGCCACCTTCGTCCTGGAGCTATTTGTCGATGAGCATTTGAATGAGGTCAACAGGATCTTGAAGAAGGTCTTTCTGATCTTCCCTCACTTCTGTCTGGGTCGAGGTCTCATTGACATGGCCAAGAACCAGGCCATGGCAGACGCATTTCAGCGGCTGGGAACCAAACAGAATCTGGAGCCTTTATCCTGGGATTTTGTCGGGAAGAACCTGTTTGCCATGGCGATGGAAGGAATTGTGTTCTTCATCTTCACTGTTCTCCTGCAGTATAAATTCTTTATTAATTTTAGTCGATGGTCGGGCTTTGTGCTGCCCCCGCTGGGCACGGAGGATGAGGATGTGGCAAGAGAGAGAGACCGTGTGAAGAACGGTAGAACTGTGGGAGATATTCTCGTCCTTACAGACCTCAGTAAGGTACAGAACCGCACCGAATACTACACAAGAAGCTGTATAAAATGTTGTTTAACCTATTCAATAGTAAAATACGGACTCATTGTGTCTCTGCAGGTATACAAGGCAGGCAGGAAGCCAGCGGTGAATCGACTTTGCTTGGGCATTCCACGGGGAGAGTGTTTTGGACTTCTTGGTGTTAACGGCGCTGGGAAAACCTCAACCTTCCGCATGCTAACAGGAGACACCCATATTACTTATGGGGAAGCATTTCTTAGCAACCACAGTGTTCTTACAGAAATGGAGAAAGTTCATCAGCTGATGGGCTACTGTCCTCAGTTTGATGCCATCAGTGACCTGCTGACAGGACGTGAGCACCTGGAGTTCTACGCTCGCCTCAGAGGAGTTCCAGAAGCTCATGTTGCAAAGGTACAGGATGCTCCAAAAATATTATTATTATTACAAAACATGGAAGAGTGTGAGGCTCTATGCACCCGAATGGCCATCATGGTGAACGGCAGGTTCCAGTGTCTGGGCTCAGTCCAGCACCTGAAGAACAGGTTTGGAGACGGTTACACAATAATCCTTCGTTTGTCCACCCCGTCTACAGAACCATGCCCGGTGGAAACCTACATCCAGAACTCCTTCCCTGGGATCCAGCTGAAGGAGAGACATCAGAATGTTCTCCATTACCAGCTGCCATCACAAACCTGTTCGCTCGCTCGCGTCTTTGAGGTTCTGTCAAATAATTATAAGGAGCTGGGGATAGCTGACTACTCAGTGTCACAGACTACACTGGATCAGGTGTTTGTTAACTTCGCAAAGGAGCAGTCAGATGATGATCAGCTCAGGGAAGTCACAGTAAACGGTGGATCCGTGGCCAACAGACTTCAGCGGCCCACGGACCTCAAACTCGAGAAATTCAGCAGGTCTTCCACACCACACTCTCTTTCAACACCCTCTACAGATCAAGCTGCTCGCTCAGAACAAACCCCTGAGCCTTCATCTACTAGTTTAAAGACCAAAAAGAGTAAATCGAACAGTCCGTCAGTCTCAAGACAGCAACAGCAGATCCGGATGGAACCTGTTGGCGAGGCAGCTAACGGATCACACCCTCCTGAAGACCAGACTCTTGGGAGAAAAGATCCATCCATGTTATTTATTGTCAGTACCAAAACACAGGAAAGCAAAGTGTGAAAAAAAACAAAGATATTCAGAACCAAACAGTCATGATGTGGATCTCTGGTGGTCTTTGGTGCCTTCTTCACATATAATTTTCCAAAATTTTTATATAGTTACTTTAAAACCAATCAGTTA

Function

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_03719251_03750681.mRNA True 6543 mRNA 0.49 39 3719251 3750801

Neighbor

gene id symbol gene type direction distance location
CI01000057_03709399_03714556 NA coding upstream 4692 3708944 ~ 3714559 (+)
CI01000057_03692584_03701758 NA coding upstream 17219 3692584 ~ 3702032 (+)
CI01000057_03669937_03677055 SLC35E1 coding upstream 41370 3669410 ~ 3677881 (+)
CI01000057_03652858_03668897 NA coding upstream 50159 3652806 ~ 3669092 (+)
CI01000057_03636623_03639946 NA coding upstream 79122 3636623 ~ 3640129 (+)
CI01000057_03752329_03758938 R3HDM4 coding downstream 603 3751404 ~ 3759109 (+)
CI01000057_03790271_03807327 ARID3A coding downstream 39388 3790189 ~ 3807327 (+)
CI01000057_03817584_03827165 CTDSPL3 coding downstream 66225 3817026 ~ 3827165 (+)
CI01000057_03842028_03844033 NDUFS7.S, MGC85267, NDUFS7 coding downstream 91227 3842028 ~ 3844691 (+)
CI01000057_03857470_03880767 DAZAP1 coding downstream 106669 3857470 ~ 3880879 (+)
G245349 NA non-coding upstream 10803 3707828 ~ 3708448 (+)
G245358 NA non-coding upstream 12397 3706357 ~ 3706854 (+)
G245428 NA non-coding upstream 35897 3683154 ~ 3683354 (+)
G245360 NA non-coding upstream 366655 3337261 ~ 3352596 (+)
G245389 NA non-coding upstream 392081 3326786 ~ 3327170 (+)
G245430 NA non-coding downstream 13510 3764311 ~ 3764625 (+)
G245357 NA non-coding downstream 64832 3815633 ~ 3816359 (+)
G245341 NA non-coding downstream 96502 3847303 ~ 3848415 (+)
G245346 NA non-coding downstream 98370 3849171 ~ 3851942 (+)
G245439 NA non-coding downstream 147523 3898324 ~ 3898641 (+)
G245401 NA other upstream 180809 3537569 ~ 3538442 (+)
G245231 NA other upstream 426689 3087096 ~ 3292562 (+)
G243991 NA other upstream 1066691 2635237 ~ 2652560 (+)
G243975 NA other upstream 1142399 2576453 ~ 2576852 (+)
CI01000057_02395285_02396439 NA other upstream 1322769 2394598 ~ 2396561 (+)
G245486 NA other downstream 459096 4209897 ~ 4212081 (+)
G245725 NA other downstream 1347884 5098685 ~ 5103606 (+)
CI01000057_05564489_05579041 NA other downstream 1823103 5564489 ~ 5579843 (+)
G245856 NA other downstream 1886853 5637654 ~ 5643340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003179 APBA3 coding NC_007122.7 CM002895.2 5565082 ~ 5659681 (+)
eurasian perch (Perca fluviatilis) G6210 abca1,LOC108241480,LOC106528336 unknown NC_053112.1 CM020909.1 20045051 ~ 20051119 (+)